Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22635 | 5' | -56 | NC_005091.1 | + | 7397 | 0.66 | 0.699231 |
Target: 5'- gGUCUgGUGCGcCUCG-GCuuGGUCGAg -3' miRNA: 3'- -CAGAgCAUGCuGAGUgCGugCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 9937 | 0.69 | 0.548599 |
Target: 5'- cGUCaCGUACGGC-CACGgAUGGUCGu -3' miRNA: 3'- -CAGaGCAUGCUGaGUGCgUGCCGGCu -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 11424 | 0.72 | 0.373786 |
Target: 5'- uGUUUCGcgGCGGC-CACGU-CGGCCGAc -3' miRNA: 3'- -CAGAGCa-UGCUGaGUGCGuGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 14328 | 0.67 | 0.65626 |
Target: 5'- gGUCggCGUACGAC--ACGCaagGCGGCuCGAc -3' miRNA: 3'- -CAGa-GCAUGCUGagUGCG---UGCCG-GCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 17536 | 0.66 | 0.688557 |
Target: 5'- --aUCGuUGCGAag-AUGCGCGGCCGGg -3' miRNA: 3'- cagAGC-AUGCUgagUGCGUGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 17630 | 0.67 | 0.667061 |
Target: 5'- aUCUCGUcgccgauaaucGCGGC-CAUGCcCGGCuCGAu -3' miRNA: 3'- cAGAGCA-----------UGCUGaGUGCGuGCCG-GCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 20347 | 0.68 | 0.591338 |
Target: 5'- -aCUCGcaaaGCGGCg-ACGCGuCGGCCGAu -3' miRNA: 3'- caGAGCa---UGCUGagUGCGU-GCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 21928 | 0.7 | 0.447029 |
Target: 5'- cGUCUCGUucAUGACgcuCGCGCGGCUu- -3' miRNA: 3'- -CAGAGCA--UGCUGaguGCGUGCCGGcu -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 24886 | 0.67 | 0.634604 |
Target: 5'- -cCUCG-GCGGCcugCGCaGCACGGCgGAa -3' miRNA: 3'- caGAGCaUGCUGa--GUG-CGUGCCGgCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 26321 | 0.68 | 0.580584 |
Target: 5'- cUCUCugGCGgccuGCUCGCGCcCGGCCGc -3' miRNA: 3'- cAGAGcaUGC----UGAGUGCGuGCCGGCu -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 26473 | 0.66 | 0.67783 |
Target: 5'- -gCUCG-GCGACUUGCGCuucaaGGCCa- -3' miRNA: 3'- caGAGCaUGCUGAGUGCGug---CCGGcu -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 26629 | 0.67 | 0.667061 |
Target: 5'- -gCUUGU-CGAgUUCACGgGCGGUCGAu -3' miRNA: 3'- caGAGCAuGCU-GAGUGCgUGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 27891 | 0.68 | 0.591338 |
Target: 5'- -aCUCG-GCGACggagCGCGUguaccucgACGGCCGGc -3' miRNA: 3'- caGAGCaUGCUGa---GUGCG--------UGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 28232 | 0.67 | 0.667061 |
Target: 5'- aUUUCGacgcgaagACGACggacgcCACGC-CGGCCGAa -3' miRNA: 3'- cAGAGCa-------UGCUGa-----GUGCGuGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 29493 | 0.68 | 0.580584 |
Target: 5'- ---aCGUAgGACgCugGCGCGcGCCGAu -3' miRNA: 3'- cagaGCAUgCUGaGugCGUGC-CGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 30035 | 0.7 | 0.466557 |
Target: 5'- aUCUCGaccGCGAaggguacgCACGCAUGGUCGAg -3' miRNA: 3'- cAGAGCa--UGCUga------GUGCGUGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 31824 | 0.66 | 0.719329 |
Target: 5'- -cCUCGgACGGCUCgcagaagGCGUACGGCa-- -3' miRNA: 3'- caGAGCaUGCUGAG-------UGCGUGCCGgcu -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 32592 | 0.66 | 0.709842 |
Target: 5'- uUCgUCGUACGAggcgUUCACGU-CGGCCuGAa -3' miRNA: 3'- cAG-AGCAUGCU----GAGUGCGuGCCGG-CU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 33187 | 0.71 | 0.400291 |
Target: 5'- ---gCGUAUGGCUUcagaGCGCGGCCGAc -3' miRNA: 3'- cagaGCAUGCUGAGug--CGUGCCGGCU- -5' |
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22635 | 5' | -56 | NC_005091.1 | + | 33278 | 0.69 | 0.527582 |
Target: 5'- -cCUCGUACaGgacaugaagcaGCUCGCG-GCGGCCGAu -3' miRNA: 3'- caGAGCAUG-C-----------UGAGUGCgUGCCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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