miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22636 3' -60.9 NC_005091.1 + 11757 0.66 0.453241
Target:  5'- aGC-CGCGCcaucgaGCCGCugaaGGCCGGCGAc -3'
miRNA:   3'- -CGuGUGCG------UGGCGucc-CCGGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 34841 0.66 0.434417
Target:  5'- -gACGCGCGCgGcCGGGacauGGCCGACa-- -3'
miRNA:   3'- cgUGUGCGUGgC-GUCC----CCGGCUGcua -5'
22636 3' -60.9 NC_005091.1 + 12160 0.66 0.425176
Target:  5'- aGCGCGCGUACUGCGGcGGGaUCaGCGc- -3'
miRNA:   3'- -CGUGUGCGUGGCGUC-CCC-GGcUGCua -5'
22636 3' -60.9 NC_005091.1 + 16707 0.66 0.398174
Target:  5'- gGCcCACGCGCCGCcuAGGaaGGCCGcuACGu- -3'
miRNA:   3'- -CGuGUGCGUGGCG--UCC--CCGGC--UGCua -5'
22636 3' -60.9 NC_005091.1 + 44410 0.66 0.398174
Target:  5'- uGCACAuuguguggUGCACCGUAGaGGCCGG-GAa -3'
miRNA:   3'- -CGUGU--------GCGUGGCGUCcCCGGCUgCUa -5'
22636 3' -60.9 NC_005091.1 + 49049 0.67 0.38942
Target:  5'- cGCGCugcuGCGCACCGUgugcgGGcGGGgCGAUGGg -3'
miRNA:   3'- -CGUG----UGCGUGGCG-----UC-CCCgGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 31798 0.67 0.38942
Target:  5'- gGCAUuucgGCGCAgCCGaAGGcGGCCGGCGc- -3'
miRNA:   3'- -CGUG----UGCGU-GGCgUCC-CCGGCUGCua -5'
22636 3' -60.9 NC_005091.1 + 55582 0.67 0.380794
Target:  5'- cGCGgucCACGCGCUcguGCAGGcGGCgauCGGCGAa -3'
miRNA:   3'- -CGU---GUGCGUGG---CGUCC-CCG---GCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 36495 0.67 0.372296
Target:  5'- aGCGC-CGUGCUGCGGcGGCCGGauCGAa -3'
miRNA:   3'- -CGUGuGCGUGGCGUCcCCGGCU--GCUa -5'
22636 3' -60.9 NC_005091.1 + 6452 0.67 0.372296
Target:  5'- cGUGCGCGCugCGCugaAGGaagcaGGCgCGACGGa -3'
miRNA:   3'- -CGUGUGCGugGCG---UCC-----CCG-GCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 5499 0.67 0.363928
Target:  5'- cGguCGCGCuGCCGCAGGaaCUGACGGa -3'
miRNA:   3'- -CguGUGCG-UGGCGUCCccGGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 48817 0.67 0.355692
Target:  5'- aCGCGCuGCGCCGUAc-GGCCGAUGAc -3'
miRNA:   3'- cGUGUG-CGUGGCGUccCCGGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 16752 0.68 0.331001
Target:  5'- gGCcCACGCuccgguaGgCGCGGGGGacuuaCCGACGAUa -3'
miRNA:   3'- -CGuGUGCG-------UgGCGUCCCC-----GGCUGCUA- -5'
22636 3' -60.9 NC_005091.1 + 41042 0.68 0.316502
Target:  5'- aGCGCACGCAgCGCu-GGGCgGgacGCGGUg -3'
miRNA:   3'- -CGUGUGCGUgGCGucCCCGgC---UGCUA- -5'
22636 3' -60.9 NC_005091.1 + 10234 0.69 0.287559
Target:  5'- -gACAaGCGCCgaGCGGGGGCCGAUc-- -3'
miRNA:   3'- cgUGUgCGUGG--CGUCCCCGGCUGcua -5'
22636 3' -60.9 NC_005091.1 + 2029 0.69 0.280657
Target:  5'- -aAUAUGgugaGCCGCAGGGGaCUGGCGAc -3'
miRNA:   3'- cgUGUGCg---UGGCGUCCCC-GGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 37036 0.69 0.279974
Target:  5'- aGCAgGCcaucagucuucccGCACUGCGccGGGCCGACGAa -3'
miRNA:   3'- -CGUgUG-------------CGUGGCGUc-CCCGGCUGCUa -5'
22636 3' -60.9 NC_005091.1 + 15563 0.7 0.254362
Target:  5'- uGCACACGCGCaacggacuuCGCAGcGGGCCacUGGUa -3'
miRNA:   3'- -CGUGUGCGUG---------GCGUC-CCCGGcuGCUA- -5'
22636 3' -60.9 NC_005091.1 + 53988 0.7 0.248112
Target:  5'- gGCACAUGCGCCaugaucCAGcGGCCGGCGu- -3'
miRNA:   3'- -CGUGUGCGUGGc-----GUCcCCGGCUGCua -5'
22636 3' -60.9 NC_005091.1 + 41011 0.71 0.218752
Target:  5'- cGgAgACGC-CgGCcGGGGCCGACGAg -3'
miRNA:   3'- -CgUgUGCGuGgCGuCCCCGGCUGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.