miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22637 3' -54.9 NC_005091.1 + 50993 0.66 0.792828
Target:  5'- aCGGCGGguaucacauucAUCGAGCGUGugGCuauaGCCc -3'
miRNA:   3'- -GCUGCU-----------UAGCUCGCGUugCGca--CGGc -5'
22637 3' -54.9 NC_005091.1 + 28358 0.66 0.783107
Target:  5'- aGGCGAAggucaCGcaAGcCGcCAGCGCGUcGCCGg -3'
miRNA:   3'- gCUGCUUa----GC--UC-GC-GUUGCGCA-CGGC- -5'
22637 3' -54.9 NC_005091.1 + 44884 0.66 0.773233
Target:  5'- aGGCGGuaCGGGCggcgGCAAgGCG-GCCGa -3'
miRNA:   3'- gCUGCUuaGCUCG----CGUUgCGCaCGGC- -5'
22637 3' -54.9 NC_005091.1 + 50892 0.66 0.770242
Target:  5'- uGACGAccaacaaugcaccAGUGCAACGCGcGCCGa -3'
miRNA:   3'- gCUGCUuagc---------UCGCGUUGCGCaCGGC- -5'
22637 3' -54.9 NC_005091.1 + 19991 0.66 0.763216
Target:  5'- gCGGCGAuugguUCGAGUGCGccgAgGCGgguucgaagGCCGc -3'
miRNA:   3'- -GCUGCUu----AGCUCGCGU---UgCGCa--------CGGC- -5'
22637 3' -54.9 NC_005091.1 + 4423 0.66 0.763216
Target:  5'- aGGCaGGUCGAGCGgGcACGCccaGCCGg -3'
miRNA:   3'- gCUGcUUAGCUCGCgU-UGCGca-CGGC- -5'
22637 3' -54.9 NC_005091.1 + 54319 0.66 0.763216
Target:  5'- cCGcAUG-GUCGAGCGCuuCGCGcaUGUCGu -3'
miRNA:   3'- -GC-UGCuUAGCUCGCGuuGCGC--ACGGC- -5'
22637 3' -54.9 NC_005091.1 + 6480 0.66 0.763216
Target:  5'- gCGACGGAUggCGAaCGCAucCGCaugGUGCCGc -3'
miRNA:   3'- -GCUGCUUA--GCUcGCGUu-GCG---CACGGC- -5'
22637 3' -54.9 NC_005091.1 + 29352 0.66 0.753068
Target:  5'- gCGACGGAU--GGCGCGACGaagcUGUCGa -3'
miRNA:   3'- -GCUGCUUAgcUCGCGUUGCgc--ACGGC- -5'
22637 3' -54.9 NC_005091.1 + 16339 0.66 0.753068
Target:  5'- uCGGCGcguucGUCGcgagcGGCGCAuCGCaUGCCGg -3'
miRNA:   3'- -GCUGCu----UAGC-----UCGCGUuGCGcACGGC- -5'
22637 3' -54.9 NC_005091.1 + 22945 0.66 0.752047
Target:  5'- gGGCGA--CGAGCGUgcagcaaucgaauAugGCG-GCCGa -3'
miRNA:   3'- gCUGCUuaGCUCGCG-------------UugCGCaCGGC- -5'
22637 3' -54.9 NC_005091.1 + 45786 0.67 0.7428
Target:  5'- gGACGAGUgGGGCGaAGCGCagaagGUCGa -3'
miRNA:   3'- gCUGCUUAgCUCGCgUUGCGca---CGGC- -5'
22637 3' -54.9 NC_005091.1 + 5680 0.67 0.7428
Target:  5'- cCGGCGAucuccuuagCGAGCGCAGCuuGCG-GCg- -3'
miRNA:   3'- -GCUGCUua-------GCUCGCGUUG--CGCaCGgc -5'
22637 3' -54.9 NC_005091.1 + 24948 0.67 0.732423
Target:  5'- aGACGAuUCGGcCGC--CGCaGUGCCGa -3'
miRNA:   3'- gCUGCUuAGCUcGCGuuGCG-CACGGC- -5'
22637 3' -54.9 NC_005091.1 + 46539 0.67 0.726149
Target:  5'- gCGACGGcuuGUCGAGCGUcGCcuucuugaucgccuuGCaUGCCGa -3'
miRNA:   3'- -GCUGCU---UAGCUCGCGuUG---------------CGcACGGC- -5'
22637 3' -54.9 NC_005091.1 + 49398 0.67 0.711385
Target:  5'- gGACGGcaCGAGCGCuaucGACGCGU-UCGa -3'
miRNA:   3'- gCUGCUuaGCUCGCG----UUGCGCAcGGC- -5'
22637 3' -54.9 NC_005091.1 + 45809 0.67 0.708201
Target:  5'- uCGGUGcAUCGgaagagcaguagccGGCGCGGCGCGcgGCCGa -3'
miRNA:   3'- -GCUGCuUAGC--------------UCGCGUUGCGCa-CGGC- -5'
22637 3' -54.9 NC_005091.1 + 41747 0.67 0.700747
Target:  5'- uGACGuucgggucuUCGAGCGCcuCGCGaacuuccGCCGg -3'
miRNA:   3'- gCUGCuu-------AGCUCGCGuuGCGCa------CGGC- -5'
22637 3' -54.9 NC_005091.1 + 4990 0.67 0.700747
Target:  5'- cCGugGAAgcgcgaagcauUCGAucgcguccugcGcCGCAACGCGUGUCa -3'
miRNA:   3'- -GCugCUU-----------AGCU-----------C-GCGUUGCGCACGGc -5'
22637 3' -54.9 NC_005091.1 + 45557 0.67 0.700747
Target:  5'- aCGGCGAagAUCGGGuCGcCGAUGUGaagcugGCCGg -3'
miRNA:   3'- -GCUGCU--UAGCUC-GC-GUUGCGCa-----CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.