miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22638 3' -58.5 NC_005091.1 + 16745 0.65 0.596135
Target:  5'- cGUGAUUGGCCcacgcuccgguaggcGCGGGggacuuaCCGACGAUauagcgaucgcccucGGCc -3'
miRNA:   3'- -CACUAGCCGG---------------CGCUC-------GGCUGCUA---------------CCG- -5'
22638 3' -58.5 NC_005091.1 + 31786 0.66 0.588702
Target:  5'- -cGAgcaGGCCGCcgacGAGCgCGACGAcacGGUa -3'
miRNA:   3'- caCUag-CCGGCG----CUCG-GCUGCUa--CCG- -5'
22638 3' -58.5 NC_005091.1 + 8060 0.66 0.588702
Target:  5'- ----aCGGCa-CGAGCCcgcuuGCGAUGGCg -3'
miRNA:   3'- cacuaGCCGgcGCUCGGc----UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 9078 0.66 0.578113
Target:  5'- -cGAUCGaCCGUGGGUCGGCGucguGCu -3'
miRNA:   3'- caCUAGCcGGCGCUCGGCUGCuac-CG- -5'
22638 3' -58.5 NC_005091.1 + 50746 0.66 0.578113
Target:  5'- -cGA-CGGCCGCacgcuugauaucGAGCCGcaguuCGcgGGCc -3'
miRNA:   3'- caCUaGCCGGCG------------CUCGGCu----GCuaCCG- -5'
22638 3' -58.5 NC_005091.1 + 53593 0.66 0.578113
Target:  5'- aUGGUUcGCCGaUGAaCaCGGCGAUGGCg -3'
miRNA:   3'- cACUAGcCGGC-GCUcG-GCUGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 32181 0.66 0.567566
Target:  5'- --aGUCGG-CGCGgacccGGCCGGCGGcaagGGCa -3'
miRNA:   3'- cacUAGCCgGCGC-----UCGGCUGCUa---CCG- -5'
22638 3' -58.5 NC_005091.1 + 36442 0.66 0.567566
Target:  5'- uGUGGggcgucUGGCUgaaggacgGCGAGUCGAUGAcGGCg -3'
miRNA:   3'- -CACUa-----GCCGG--------CGCUCGGCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 34088 0.66 0.567566
Target:  5'- -cGAUagCGGCCGCGuacgacgcGuuGAUGAcGGCg -3'
miRNA:   3'- caCUA--GCCGGCGCu-------CggCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 18986 0.66 0.557068
Target:  5'- -cGAcUGGCCGCGAuGCuCGGCGGaaucgugccGGCg -3'
miRNA:   3'- caCUaGCCGGCGCU-CG-GCUGCUa--------CCG- -5'
22638 3' -58.5 NC_005091.1 + 18143 0.66 0.546627
Target:  5'- -cGGUCGG-CGCGAGCuucgcggccCGGCGAUcGaGCg -3'
miRNA:   3'- caCUAGCCgGCGCUCG---------GCUGCUA-C-CG- -5'
22638 3' -58.5 NC_005091.1 + 23507 0.66 0.546627
Target:  5'- -aGAUCauGGCgaCGCGcG-CGGCGAUGGCg -3'
miRNA:   3'- caCUAG--CCG--GCGCuCgGCUGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 52940 0.66 0.545586
Target:  5'- -cGGcCGGCUGCaaacaaaucgucgGAgcGCCGaACGAUGGCg -3'
miRNA:   3'- caCUaGCCGGCG-------------CU--CGGC-UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 34837 0.67 0.536249
Target:  5'- -cGcgCGGCCGgGAcaugGCCGAcaaCGAcGGCu -3'
miRNA:   3'- caCuaGCCGGCgCU----CGGCU---GCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 14184 0.67 0.536249
Target:  5'- -aGGUacUGGCCGCucGCCGACGAcaccGCg -3'
miRNA:   3'- caCUA--GCCGGCGcuCGGCUGCUac--CG- -5'
22638 3' -58.5 NC_005091.1 + 32822 0.67 0.52594
Target:  5'- -aGG-CGGCCGaguagcaguuCGAGUCGAUGAcGGCc -3'
miRNA:   3'- caCUaGCCGGC----------GCUCGGCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 37132 0.67 0.515706
Target:  5'- --cGUCGGCCcggcgcaguGCGGGaaGACuGAUGGCc -3'
miRNA:   3'- cacUAGCCGG---------CGCUCggCUG-CUACCG- -5'
22638 3' -58.5 NC_005091.1 + 598 0.67 0.515706
Target:  5'- -gGAUuccCGGCCGCGuGCCuGCGuUGaGCg -3'
miRNA:   3'- caCUA---GCCGGCGCuCGGcUGCuAC-CG- -5'
22638 3' -58.5 NC_005091.1 + 57992 0.67 0.515706
Target:  5'- -gGAUuccCGGCCGCGuGCCuGCGuUGaGCg -3'
miRNA:   3'- caCUA---GCCGGCGCuCGGcUGCuAC-CG- -5'
22638 3' -58.5 NC_005091.1 + 49796 0.67 0.505555
Target:  5'- -cGAUCGGCUucugccgauGCGAucGCCG-CGuucGUGGCg -3'
miRNA:   3'- caCUAGCCGG---------CGCU--CGGCuGC---UACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.