miRNA display CGI


Results 1 - 20 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22638 3' -58.5 NC_005091.1 + 50377 1.1 0.000442
Target:  5'- gGUGAUCGGCCGCGAGCCGACGAUGGCu -3'
miRNA:   3'- -CACUAGCCGGCGCUCGGCUGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 12121 0.78 0.109922
Target:  5'- -gGAaCGGCacgGCGAGCaCGAUGAUGGCg -3'
miRNA:   3'- caCUaGCCGg--CGCUCG-GCUGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 56782 0.75 0.160404
Target:  5'- -cGGUCGGUugauCGCGGGCaacGCGAUGGCg -3'
miRNA:   3'- caCUAGCCG----GCGCUCGgc-UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 25317 0.75 0.164716
Target:  5'- cGUGAUCGGCCuCGuGCuCGGCgugaagguGAUGGCg -3'
miRNA:   3'- -CACUAGCCGGcGCuCG-GCUG--------CUACCG- -5'
22638 3' -58.5 NC_005091.1 + 45708 0.74 0.203106
Target:  5'- --cGUCGGCCGCGcGCCG-CGccGGCu -3'
miRNA:   3'- cacUAGCCGGCGCuCGGCuGCuaCCG- -5'
22638 3' -58.5 NC_005091.1 + 29014 0.73 0.225074
Target:  5'- -cGAUcaCGGCCuCGAuGCCGACGAgaacgGGCa -3'
miRNA:   3'- caCUA--GCCGGcGCU-CGGCUGCUa----CCG- -5'
22638 3' -58.5 NC_005091.1 + 34584 0.73 0.230872
Target:  5'- cGUGGUCGGCuaCGUGAaaaCCGGCGAagugcUGGCg -3'
miRNA:   3'- -CACUAGCCG--GCGCUc--GGCUGCU-----ACCG- -5'
22638 3' -58.5 NC_005091.1 + 17862 0.72 0.247158
Target:  5'- --uAUCGGCCGgGAccugugcgagaucgGCCGGCGAcaacUGGCg -3'
miRNA:   3'- cacUAGCCGGCgCU--------------CGGCUGCU----ACCG- -5'
22638 3' -58.5 NC_005091.1 + 14039 0.71 0.318079
Target:  5'- cUGGUCGGUCGC-AGCCG-CGA-GGUu -3'
miRNA:   3'- cACUAGCCGGCGcUCGGCuGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 52108 0.7 0.333507
Target:  5'- cGUGAaaaggCGGCCGUc-GCCGGCGcggGGCg -3'
miRNA:   3'- -CACUa----GCCGGCGcuCGGCUGCua-CCG- -5'
22638 3' -58.5 NC_005091.1 + 41019 0.7 0.341425
Target:  5'- ----cCGGCCG-GGGCCGACGAgGGa -3'
miRNA:   3'- cacuaGCCGGCgCUCGGCUGCUaCCg -5'
22638 3' -58.5 NC_005091.1 + 33691 0.7 0.357664
Target:  5'- cGUGAagaacUCGGUCGCGAGgCGAUc--GGCg -3'
miRNA:   3'- -CACU-----AGCCGGCGCUCgGCUGcuaCCG- -5'
22638 3' -58.5 NC_005091.1 + 7223 0.7 0.365985
Target:  5'- ---cUUGGCCGgGgcguccucGGCCGGCaGAUGGCg -3'
miRNA:   3'- cacuAGCCGGCgC--------UCGGCUG-CUACCG- -5'
22638 3' -58.5 NC_005091.1 + 31113 0.7 0.36935
Target:  5'- cGUGGacuUCGGCCGCGAuCCGGCgcucaccgugcaacuGAcgGGCg -3'
miRNA:   3'- -CACU---AGCCGGCGCUcGGCUG---------------CUa-CCG- -5'
22638 3' -58.5 NC_005091.1 + 31212 0.69 0.374437
Target:  5'- aUGAUCGGCUGCucGCCGgcACGAcgcuUGaGCg -3'
miRNA:   3'- cACUAGCCGGCGcuCGGC--UGCU----AC-CG- -5'
22638 3' -58.5 NC_005091.1 + 26325 0.69 0.374437
Target:  5'- cUGG-CGGCCugcucGCGcccGGCCGcuACGAUGGCa -3'
miRNA:   3'- cACUaGCCGG-----CGC---UCGGC--UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 11800 0.69 0.391735
Target:  5'- uUGGuaUCGGCCGCucGCCGuCGAguagaGGCc -3'
miRNA:   3'- cACU--AGCCGGCGcuCGGCuGCUa----CCG- -5'
22638 3' -58.5 NC_005091.1 + 27600 0.69 0.400577
Target:  5'- aUGAUCGcGCuCGCGuG-CGACGA-GGCa -3'
miRNA:   3'- cACUAGC-CG-GCGCuCgGCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 25214 0.69 0.414986
Target:  5'- -gGggCGGCCGCugcaccgGGGUCGAugcagccggcgcguCGAUGGCg -3'
miRNA:   3'- caCuaGCCGGCG-------CUCGGCU--------------GCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 25707 0.69 0.415897
Target:  5'- -cGAUCGGCUGCccGCCGcauucgcgcuuuucGCGAagGGCa -3'
miRNA:   3'- caCUAGCCGGCGcuCGGC--------------UGCUa-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.