miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22638 3' -58.5 NC_005091.1 + 26643 0.67 0.505555
Target:  5'- -cGggCGGUCGauCGAGUCGGCGGcccGGCg -3'
miRNA:   3'- caCuaGCCGGC--GCUCGGCUGCUa--CCG- -5'
22638 3' -58.5 NC_005091.1 + 53045 0.67 0.505555
Target:  5'- cUGAUC-GCgGCGAGCaUGGCGAacGGCu -3'
miRNA:   3'- cACUAGcCGgCGCUCG-GCUGCUa-CCG- -5'
22638 3' -58.5 NC_005091.1 + 11508 0.67 0.505555
Target:  5'- --cGUCGGCCGaCGuGGCCGccGCGAaacaggGGCa -3'
miRNA:   3'- cacUAGCCGGC-GC-UCGGC--UGCUa-----CCG- -5'
22638 3' -58.5 NC_005091.1 + 13872 0.67 0.505555
Target:  5'- cUGGUaaaGCUGCGGcGCCGACGAUGcaGCc -3'
miRNA:   3'- cACUAgc-CGGCGCU-CGGCUGCUAC--CG- -5'
22638 3' -58.5 NC_005091.1 + 25035 0.67 0.49549
Target:  5'- cUGGUCGGCacuGCGgcGGCCGAauCGAUcuacgaGGCa -3'
miRNA:   3'- cACUAGCCGg--CGC--UCGGCU--GCUA------CCG- -5'
22638 3' -58.5 NC_005091.1 + 50238 0.67 0.49549
Target:  5'- ---uUCGGCCGCGuGauGAUGAagGGCg -3'
miRNA:   3'- cacuAGCCGGCGCuCggCUGCUa-CCG- -5'
22638 3' -58.5 NC_005091.1 + 9239 0.67 0.49549
Target:  5'- -cGGUgCGGCCcuGCGAagggcgaccgGCCGGCGaAUGGUc -3'
miRNA:   3'- caCUA-GCCGG--CGCU----------CGGCUGC-UACCG- -5'
22638 3' -58.5 NC_005091.1 + 49737 0.67 0.484525
Target:  5'- --cGUCGGCCGUgcguGAGUCGuACGAgacaaucacggcuUGGCa -3'
miRNA:   3'- cacUAGCCGGCG----CUCGGC-UGCU-------------ACCG- -5'
22638 3' -58.5 NC_005091.1 + 55982 0.67 0.482543
Target:  5'- uUGGUCGGCCugcugcgccaucguGCGA-CCGGgauCGAUGGUc -3'
miRNA:   3'- cACUAGCCGG--------------CGCUcGGCU---GCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 36851 0.68 0.478592
Target:  5'- -cGAUCGGCCGCGuaugccugaccgacuAcgaccgcauGCCGGacgacguUGAUGGCg -3'
miRNA:   3'- caCUAGCCGGCGC---------------U---------CGGCU-------GCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 9512 0.68 0.47564
Target:  5'- -gGGUCguGGCacauCGCGAgGCCGgcagccGCGAUGGCg -3'
miRNA:   3'- caCUAG--CCG----GCGCU-CGGC------UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 26701 0.68 0.47564
Target:  5'- cGUGAacUCGacaagcuugcuGCUGCGgcGGCCGGCGgcGGCc -3'
miRNA:   3'- -CACU--AGC-----------CGGCGC--UCGGCUGCuaCCG- -5'
22638 3' -58.5 NC_005091.1 + 28425 0.68 0.465864
Target:  5'- aGUGGUCGaGCauCGuGCUGGCGAcGGCc -3'
miRNA:   3'- -CACUAGC-CGgcGCuCGGCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 16118 0.68 0.456194
Target:  5'- -gGGUUGuGCCGCcGGCCGGCGGcaGCa -3'
miRNA:   3'- caCUAGC-CGGCGcUCGGCUGCUacCG- -5'
22638 3' -58.5 NC_005091.1 + 3917 0.68 0.453314
Target:  5'- -aGAUCGGCgcgaggcauuCGCGcuugcucucgaagcGGCCGccACGAUGGUg -3'
miRNA:   3'- caCUAGCCG----------GCGC--------------UCGGC--UGCUACCG- -5'
22638 3' -58.5 NC_005091.1 + 28073 0.68 0.446633
Target:  5'- -cGAUCaGGUCGUGucGGCCGGCGAUcagaucaugGGUg -3'
miRNA:   3'- caCUAG-CCGGCGC--UCGGCUGCUA---------CCG- -5'
22638 3' -58.5 NC_005091.1 + 18375 0.68 0.437184
Target:  5'- --cGUCGGaaacaUGCGAGCCGugGGUG-Cg -3'
miRNA:   3'- cacUAGCCg----GCGCUCGGCugCUACcG- -5'
22638 3' -58.5 NC_005091.1 + 48612 0.68 0.426925
Target:  5'- -gGggCGGCCGuCGGGgucccauCCGGCGA-GGCg -3'
miRNA:   3'- caCuaGCCGGC-GCUC-------GGCUGCUaCCG- -5'
22638 3' -58.5 NC_005091.1 + 25707 0.69 0.415897
Target:  5'- -cGAUCGGCUGCccGCCGcauucgcgcuuuucGCGAagGGCa -3'
miRNA:   3'- caCUAGCCGGCGcuCGGC--------------UGCUa-CCG- -5'
22638 3' -58.5 NC_005091.1 + 25214 0.69 0.414986
Target:  5'- -gGggCGGCCGCugcaccgGGGUCGAugcagccggcgcguCGAUGGCg -3'
miRNA:   3'- caCuaGCCGGCG-------CUCGGCU--------------GCUACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.