miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22638 5' -51.1 NC_005091.1 + 45931 0.66 0.936369
Target:  5'- gCCGCuucGUGuCCGGauggaUGUGGAAcgCGACg -3'
miRNA:   3'- -GGCGu--UAC-GGCCa----GCGCUUUuaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 701 0.66 0.936369
Target:  5'- uCCGCAGUGgucgauguCCGGgcugcUGCGuGAGGUCGAg -3'
miRNA:   3'- -GGCGUUAC--------GGCCa----GCGC-UUUUAGCUg -5'
22638 5' -51.1 NC_005091.1 + 5511 0.66 0.936369
Target:  5'- uCCGUAAgcaaCCGGUCGCGcugccgcaGGAAcUGACg -3'
miRNA:   3'- -GGCGUUac--GGCCAGCGC--------UUUUaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 51021 0.66 0.936369
Target:  5'- aCCGCGcuUG-CGGUCGCu-GAcgCGGCa -3'
miRNA:   3'- -GGCGUu-ACgGCCAGCGcuUUuaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 17729 0.66 0.930894
Target:  5'- aCCuCAucgaGCCGGgcauggcCGCGAuuAUCGGCg -3'
miRNA:   3'- -GGcGUua--CGGCCa------GCGCUuuUAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 18070 0.66 0.930894
Target:  5'- cCCGCcugaaucuUGCCGG-CGCGcAGGAUCa-- -3'
miRNA:   3'- -GGCGuu------ACGGCCaGCGC-UUUUAGcug -5'
22638 5' -51.1 NC_005091.1 + 46020 0.66 0.930894
Target:  5'- aCCGC---GCCGGaacgcaGCGAGAG-CGGCg -3'
miRNA:   3'- -GGCGuuaCGGCCag----CGCUUUUaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 9500 0.66 0.930894
Target:  5'- aUCGCGAgGCCGGcagcCGCGAugg-CGAg -3'
miRNA:   3'- -GGCGUUaCGGCCa---GCGCUuuuaGCUg -5'
22638 5' -51.1 NC_005091.1 + 30236 0.66 0.930894
Target:  5'- gCGuCGAaGCCGGcgaagccccgCGCGAAAgcGUCGGCc -3'
miRNA:   3'- gGC-GUUaCGGCCa---------GCGCUUU--UAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 12712 0.66 0.925134
Target:  5'- aUCGaCAAUcgGCUgGGUCGCGAAuuacGUUGGCg -3'
miRNA:   3'- -GGC-GUUA--CGG-CCAGCGCUUu---UAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 33837 0.66 0.925134
Target:  5'- -aGCAuccaaGCCGGcaUCGCGAuGAcgCGGCg -3'
miRNA:   3'- ggCGUua---CGGCC--AGCGCU-UUuaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 40648 0.66 0.925134
Target:  5'- aCCgGCcGUGCuCGG-CGCGGGAuacCGACu -3'
miRNA:   3'- -GG-CGuUACG-GCCaGCGCUUUua-GCUG- -5'
22638 5' -51.1 NC_005091.1 + 10642 0.66 0.925134
Target:  5'- aCGC-AUGCCGGcuucUCGgGA---UCGGCu -3'
miRNA:   3'- gGCGuUACGGCC----AGCgCUuuuAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 44010 0.66 0.925134
Target:  5'- aCGCGcuucucgauAUGCaGGUCGCcGGGAAgCGACu -3'
miRNA:   3'- gGCGU---------UACGgCCAGCG-CUUUUaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 359 0.66 0.917218
Target:  5'- aCgGCAAUGUCGcuaccgucgacgccGUCGUGAAGG-CGGCc -3'
miRNA:   3'- -GgCGUUACGGC--------------CAGCGCUUUUaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 57753 0.66 0.917218
Target:  5'- aCgGCAAUGUCGcuaccgucgacgccGUCGUGAAGG-CGGCc -3'
miRNA:   3'- -GgCGUUACGGC--------------CAGCGCUUUUaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 51982 0.66 0.912756
Target:  5'- aUGCGu--CCGGuagcUCGCGAugGUCGGCg -3'
miRNA:   3'- gGCGUuacGGCC----AGCGCUuuUAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 43021 0.66 0.912756
Target:  5'- uCCGCAGUGa-GGUCGUcAAAgcagucAUCGGCc -3'
miRNA:   3'- -GGCGUUACggCCAGCGcUUU------UAGCUG- -5'
22638 5' -51.1 NC_005091.1 + 34407 0.66 0.912756
Target:  5'- gCCGCAggGCUacuggauucaGGUCGCGcacccCGGCg -3'
miRNA:   3'- -GGCGUuaCGG----------CCAGCGCuuuuaGCUG- -5'
22638 5' -51.1 NC_005091.1 + 16084 0.67 0.906142
Target:  5'- uUCGUAGUGCCGGcCGUugcacccGGAUCGGg -3'
miRNA:   3'- -GGCGUUACGGCCaGCGcu-----UUUAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.