miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22639 3' -56.7 NC_005091.1 + 42599 0.66 0.696228
Target:  5'- --cGCCGGuuGCCGCGUGaacauucucaUCAACc -3'
miRNA:   3'- gcuUGGCCggCGGCGCAUgc--------AGUUGu -5'
22639 3' -56.7 NC_005091.1 + 27617 0.66 0.689865
Target:  5'- cCGAACUGGUCGggaagaugaucgcgcUCGCGUGCGacgaGGCAg -3'
miRNA:   3'- -GCUUGGCCGGC---------------GGCGCAUGCag--UUGU- -5'
22639 3' -56.7 NC_005091.1 + 21172 0.66 0.685613
Target:  5'- uGAGCUGGUCGuCUGCGcuugaACGcUCGACGc -3'
miRNA:   3'- gCUUGGCCGGC-GGCGCa----UGC-AGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 50815 0.66 0.685613
Target:  5'- -cGugCGGCCGUCGUGcGCG-CGGCu -3'
miRNA:   3'- gcUugGCCGGCGGCGCaUGCaGUUGu -5'
22639 3' -56.7 NC_005091.1 + 33180 0.66 0.674949
Target:  5'- gCGuuAUCGGCCGCCGCGagcUGCuUCAu-- -3'
miRNA:   3'- -GCu-UGGCCGGCGGCGC---AUGcAGUugu -5'
22639 3' -56.7 NC_005091.1 + 48715 0.66 0.674949
Target:  5'- aCGcGGCgGGCUGCUGCGUguuggugucgccGCGUCAcuagACGa -3'
miRNA:   3'- -GC-UUGgCCGGCGGCGCA------------UGCAGU----UGU- -5'
22639 3' -56.7 NC_005091.1 + 57641 0.66 0.674949
Target:  5'- -aGACCGGCUGCCGgGUcaACuucuuUCGGCGa -3'
miRNA:   3'- gcUUGGCCGGCGGCgCA--UGc----AGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 7439 0.66 0.674949
Target:  5'- --uGCCGGUgucaGCCGCGUAC-UgGACAa -3'
miRNA:   3'- gcuUGGCCGg---CGGCGCAUGcAgUUGU- -5'
22639 3' -56.7 NC_005091.1 + 46132 0.66 0.664245
Target:  5'- uCGuGCCGGaCGCCGaugauuacgagaCGUGgGUCAACGu -3'
miRNA:   3'- -GCuUGGCCgGCGGC------------GCAUgCAGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 37885 0.66 0.664245
Target:  5'- aCGGAUUcaagGGCUGCgCGCGUGCGggaAGCGc -3'
miRNA:   3'- -GCUUGG----CCGGCG-GCGCAUGCag-UUGU- -5'
22639 3' -56.7 NC_005091.1 + 23947 0.66 0.664245
Target:  5'- gGAACuCGGCCGUCaCG-AUGUaCAACAa -3'
miRNA:   3'- gCUUG-GCCGGCGGcGCaUGCA-GUUGU- -5'
22639 3' -56.7 NC_005091.1 + 55912 0.66 0.664245
Target:  5'- -uGACCGGCUGCgccgcucuucguCGCGUACuugcccgagcaGUCGGCGc -3'
miRNA:   3'- gcUUGGCCGGCG------------GCGCAUG-----------CAGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 1546 0.66 0.664245
Target:  5'- aGAgGCCGGCCGCCGgau-CGUcCGGCu -3'
miRNA:   3'- gCU-UGGCCGGCGGCgcauGCA-GUUGu -5'
22639 3' -56.7 NC_005091.1 + 20258 0.66 0.653514
Target:  5'- uCGAAUCGGCCGaCGCGU-CGcCGcuuuGCGa -3'
miRNA:   3'- -GCUUGGCCGGCgGCGCAuGCaGU----UGU- -5'
22639 3' -56.7 NC_005091.1 + 26846 0.66 0.653514
Target:  5'- gCGAGCCGG-UGCgGCGUcgcagGCGUuCAAUAc -3'
miRNA:   3'- -GCUUGGCCgGCGgCGCA-----UGCA-GUUGU- -5'
22639 3' -56.7 NC_005091.1 + 711 0.67 0.642763
Target:  5'- uCGAuguCCGGgCUGCUGCGUGagGUCGAg- -3'
miRNA:   3'- -GCUu--GGCC-GGCGGCGCAUg-CAGUUgu -5'
22639 3' -56.7 NC_005091.1 + 7092 0.67 0.642763
Target:  5'- uCGAGaCGGCCGCCGC-UGC--CGGCAa -3'
miRNA:   3'- -GCUUgGCCGGCGGCGcAUGcaGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 55962 0.67 0.642763
Target:  5'- uGAGCCGuuUGCUGCGcaagACGcUCGACAu -3'
miRNA:   3'- gCUUGGCcgGCGGCGCa---UGC-AGUUGU- -5'
22639 3' -56.7 NC_005091.1 + 56063 0.67 0.632004
Target:  5'- aGAuGCCGGUCGgCGCGUccuacuucaucGCGggCGACAc -3'
miRNA:   3'- gCU-UGGCCGGCgGCGCA-----------UGCa-GUUGU- -5'
22639 3' -56.7 NC_005091.1 + 12166 0.67 0.632004
Target:  5'- aGGcCCGGCuCG-CGCGUACG-CAACc -3'
miRNA:   3'- gCUuGGCCG-GCgGCGCAUGCaGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.