miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22639 5' -51.2 NC_005091.1 + 38805 0.66 0.923337
Target:  5'- --gGUAguACGUGAUGUUGUUGCcgaGACg -3'
miRNA:   3'- agaUAU--UGCGCUGCGACAACGcg-CUG- -5'
22639 5' -51.2 NC_005091.1 + 34443 0.66 0.917136
Target:  5'- gCUucGACGCGGCGUgcaGUacgacaaGCGCGGCc -3'
miRNA:   3'- aGAuaUUGCGCUGCGa--CAa------CGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 51589 0.66 0.917136
Target:  5'- --cGUGACG-GGCGCgcagaaGCGCGGCa -3'
miRNA:   3'- agaUAUUGCgCUGCGacaa--CGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 53149 0.66 0.903862
Target:  5'- gCUGUcucGCGUGAuucCGCUGUaGCGCG-Cg -3'
miRNA:   3'- aGAUAu--UGCGCU---GCGACAaCGCGCuG- -5'
22639 5' -51.2 NC_005091.1 + 25514 0.66 0.903862
Target:  5'- aCUcau-CGcCGA-GCUGUUGCGCGAa -3'
miRNA:   3'- aGAuauuGC-GCUgCGACAACGCGCUg -5'
22639 5' -51.2 NC_005091.1 + 45791 0.66 0.889446
Target:  5'- --aGUAGC-CGGCGC-GgcGCGCGGCc -3'
miRNA:   3'- agaUAUUGcGCUGCGaCaaCGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 33822 0.66 0.887943
Target:  5'- aUCgcgAUGACGCGGCGCUuccucgaaggGCGCa-- -3'
miRNA:   3'- -AGa--UAUUGCGCUGCGAcaa-------CGCGcug -5'
22639 5' -51.2 NC_005091.1 + 46252 0.67 0.881821
Target:  5'- aCUAcGACGCGAaggaGCUGga-CGCGAa -3'
miRNA:   3'- aGAUaUUGCGCUg---CGACaacGCGCUg -5'
22639 5' -51.2 NC_005091.1 + 29359 0.67 0.881821
Target:  5'- gCUGc-ACGCGACGgaug-GCGCGACg -3'
miRNA:   3'- aGAUauUGCGCUGCgacaaCGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 23503 0.67 0.881821
Target:  5'- ----cAugGCGACGC----GCGCGGCg -3'
miRNA:   3'- agauaUugCGCUGCGacaaCGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 4735 0.67 0.881821
Target:  5'- ----cGACGCG-CGgaGcUGCGCGAUg -3'
miRNA:   3'- agauaUUGCGCuGCgaCaACGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 6454 0.67 0.865763
Target:  5'- -----uGCGCGcuGCGCUGaaggaagcagGCGCGACg -3'
miRNA:   3'- agauauUGCGC--UGCGACaa--------CGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 52084 0.68 0.839772
Target:  5'- ----aAAUGCGACGCcGUaGCGcCGACc -3'
miRNA:   3'- agauaUUGCGCUGCGaCAaCGC-GCUG- -5'
22639 5' -51.2 NC_005091.1 + 26154 0.68 0.834316
Target:  5'- ------cCGCGAauCGCUGUcgugguaucagcgcgUGCGCGGCg -3'
miRNA:   3'- agauauuGCGCU--GCGACA---------------ACGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 29491 0.68 0.801941
Target:  5'- ----cGACGUagGACGCUGgcGCGCGcCg -3'
miRNA:   3'- agauaUUGCG--CUGCGACaaCGCGCuG- -5'
22639 5' -51.2 NC_005091.1 + 42798 0.68 0.801941
Target:  5'- -----uGCGCGACGagaUGcUGCGCGAg -3'
miRNA:   3'- agauauUGCGCUGCg--ACaACGCGCUg -5'
22639 5' -51.2 NC_005091.1 + 23222 0.69 0.781854
Target:  5'- aCUAc--CGUGcCGCUGUgguaGCGCGGCg -3'
miRNA:   3'- aGAUauuGCGCuGCGACAa---CGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 51853 0.69 0.771559
Target:  5'- aUCgcgGAUGCGAUGCUGcgcgagucGCGCGAa -3'
miRNA:   3'- -AGauaUUGCGCUGCGACaa------CGCGCUg -5'
22639 5' -51.2 NC_005091.1 + 1983 0.69 0.771559
Target:  5'- gCUGUAcACGCacacGACGCUGU--CGCGGCc -3'
miRNA:   3'- aGAUAU-UGCG----CUGCGACAacGCGCUG- -5'
22639 5' -51.2 NC_005091.1 + 53676 0.69 0.761111
Target:  5'- uUCUAUuuggaaucggacGGCGCGccgggguuGCGCUGgcaaugGUGCGACg -3'
miRNA:   3'- -AGAUA------------UUGCGC--------UGCGACaa----CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.