miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2264 3' -60 NC_001405.1 + 20832 1.07 0.000248
Target:  5'- uACCCGCCAACGCCACCAACGUGCCCAu -3'
miRNA:   3'- -UGGGCGGUUGCGGUGGUUGCACGGGU- -5'
2264 3' -60 NC_001405.1 + 8694 0.82 0.024332
Target:  5'- uGCCCGCgcGCGgCGCCGACGUGCCCc -3'
miRNA:   3'- -UGGGCGguUGCgGUGGUUGCACGGGu -5'
2264 3' -60 NC_001405.1 + 24140 0.75 0.076487
Target:  5'- cGCCUccaCCGAUGCCGCCAACGcGCCUAc -3'
miRNA:   3'- -UGGGc--GGUUGCGGUGGUUGCaCGGGU- -5'
2264 3' -60 NC_001405.1 + 12259 0.74 0.101905
Target:  5'- cACgCCGCCGACGUUGCCAGCGcGCgCGg -3'
miRNA:   3'- -UG-GGCGGUUGCGGUGGUUGCaCGgGU- -5'
2264 3' -60 NC_001405.1 + 16067 0.71 0.146901
Target:  5'- uACaCGCCcACGCCGCCAccaGUGUCCAc -3'
miRNA:   3'- -UGgGCGGuUGCGGUGGUug-CACGGGU- -5'
2264 3' -60 NC_001405.1 + 25614 0.71 0.146901
Target:  5'- uGCCCGCCAccugcuguGCGCUucCUAGCGacuuugUGCCCAu -3'
miRNA:   3'- -UGGGCGGU--------UGCGGu-GGUUGC------ACGGGU- -5'
2264 3' -60 NC_001405.1 + 16308 0.71 0.150611
Target:  5'- gGCCCG-CAugGCCGCCcgucggccggugcGACGUGCgCGg -3'
miRNA:   3'- -UGGGCgGUugCGGUGG-------------UUGCACGgGU- -5'
2264 3' -60 NC_001405.1 + 17508 0.71 0.168607
Target:  5'- aACCCGCCGcCGCCgucGCCGuCGccaGCCCGu -3'
miRNA:   3'- -UGGGCGGUuGCGG---UGGUuGCa--CGGGU- -5'
2264 3' -60 NC_001405.1 + 9783 0.7 0.178067
Target:  5'- cACCCGCUGcCGcCCGCCAcgGUGCUCAg -3'
miRNA:   3'- -UGGGCGGUuGC-GGUGGUugCACGGGU- -5'
2264 3' -60 NC_001405.1 + 21363 0.7 0.184967
Target:  5'- uCCCaCCAugcGCGagggacaggcuuaccCCGCCAACGUGCCCu -3'
miRNA:   3'- uGGGcGGU---UGC---------------GGUGGUUGCACGGGu -5'
2264 3' -60 NC_001405.1 + 18611 0.69 0.203801
Target:  5'- cCCUGCgCcgUGCCGCCAGCG-GUCCGc -3'
miRNA:   3'- uGGGCG-GuuGCGGUGGUUGCaCGGGU- -5'
2264 3' -60 NC_001405.1 + 26449 0.69 0.203801
Target:  5'- cUCCGCUccucaGGCGCCGCCGGCacUGCCUg -3'
miRNA:   3'- uGGGCGG-----UUGCGGUGGUUGc-ACGGGu -5'
2264 3' -60 NC_001405.1 + 16083 0.69 0.214968
Target:  5'- cACCgCGUCAaugGCGUCAUCGACGguggugcGCCCAg -3'
miRNA:   3'- -UGG-GCGGU---UGCGGUGGUUGCa------CGGGU- -5'
2264 3' -60 NC_001405.1 + 12732 0.69 0.226655
Target:  5'- uCCUGaguacaCAGC-CCGCCAACGUGCCgCGg -3'
miRNA:   3'- uGGGCg-----GUUGcGGUGGUUGCACGG-GU- -5'
2264 3' -60 NC_001405.1 + 16176 0.68 0.243918
Target:  5'- -gUCGCCAcCGCCGCCGACccggcacugccGCCCAa -3'
miRNA:   3'- ugGGCGGUuGCGGUGGUUGca---------CGGGU- -5'
2264 3' -60 NC_001405.1 + 23581 0.68 0.245192
Target:  5'- aACCCGCUGA-GCCuGCCGAuCGUGUCUg -3'
miRNA:   3'- -UGGGCGGUUgCGG-UGGUU-GCACGGGu -5'
2264 3' -60 NC_001405.1 + 17787 0.68 0.251644
Target:  5'- cGCCCGUCAGgcCGUgGCCGGCcaUGCCCc -3'
miRNA:   3'- -UGGGCGGUU--GCGgUGGUUGc-ACGGGu -5'
2264 3' -60 NC_001405.1 + 23999 0.68 0.257571
Target:  5'- cCCCGUCGccguCGCCGCCGccuccccGCGcGCCCc -3'
miRNA:   3'- uGGGCGGUu---GCGGUGGU-------UGCaCGGGu -5'
2264 3' -60 NC_001405.1 + 8567 0.68 0.260912
Target:  5'- cGCCCGCCGcgcgguaccguagucGCGCCGCgGggauGCG-GCCUc -3'
miRNA:   3'- -UGGGCGGU---------------UGCGGUGgU----UGCaCGGGu -5'
2264 3' -60 NC_001405.1 + 27699 0.67 0.278859
Target:  5'- -gCgGCCAGCGCCGCCGAUcugaaaUGuCCCGu -3'
miRNA:   3'- ugGgCGGUUGCGGUGGUUGc-----AC-GGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.