Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2264 | 3' | -60 | NC_001405.1 | + | 26449 | 0.69 | 0.203801 |
Target: 5'- cUCCGCUccucaGGCGCCGCCGGCacUGCCUg -3' miRNA: 3'- uGGGCGG-----UUGCGGUGGUUGc-ACGGGu -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 21363 | 0.7 | 0.184967 |
Target: 5'- uCCCaCCAugcGCGagggacaggcuuaccCCGCCAACGUGCCCu -3' miRNA: 3'- uGGGcGGU---UGC---------------GGUGGUUGCACGGGu -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 9783 | 0.7 | 0.178067 |
Target: 5'- cACCCGCUGcCGcCCGCCAcgGUGCUCAg -3' miRNA: 3'- -UGGGCGGUuGC-GGUGGUugCACGGGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 17508 | 0.71 | 0.168607 |
Target: 5'- aACCCGCCGcCGCCgucGCCGuCGccaGCCCGu -3' miRNA: 3'- -UGGGCGGUuGCGG---UGGUuGCa--CGGGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 16308 | 0.71 | 0.150611 |
Target: 5'- gGCCCG-CAugGCCGCCcgucggccggugcGACGUGCgCGg -3' miRNA: 3'- -UGGGCgGUugCGGUGG-------------UUGCACGgGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 25614 | 0.71 | 0.146901 |
Target: 5'- uGCCCGCCAccugcuguGCGCUucCUAGCGacuuugUGCCCAu -3' miRNA: 3'- -UGGGCGGU--------UGCGGu-GGUUGC------ACGGGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 16067 | 0.71 | 0.146901 |
Target: 5'- uACaCGCCcACGCCGCCAccaGUGUCCAc -3' miRNA: 3'- -UGgGCGGuUGCGGUGGUug-CACGGGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 12259 | 0.74 | 0.101905 |
Target: 5'- cACgCCGCCGACGUUGCCAGCGcGCgCGg -3' miRNA: 3'- -UG-GGCGGUUGCGGUGGUUGCaCGgGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 24140 | 0.75 | 0.076487 |
Target: 5'- cGCCUccaCCGAUGCCGCCAACGcGCCUAc -3' miRNA: 3'- -UGGGc--GGUUGCGGUGGUUGCaCGGGU- -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 8694 | 0.82 | 0.024332 |
Target: 5'- uGCCCGCgcGCGgCGCCGACGUGCCCc -3' miRNA: 3'- -UGGGCGguUGCgGUGGUUGCACGGGu -5' |
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2264 | 3' | -60 | NC_001405.1 | + | 20832 | 1.07 | 0.000248 |
Target: 5'- uACCCGCCAACGCCACCAACGUGCCCAu -3' miRNA: 3'- -UGGGCGGUUGCGGUGGUUGCACGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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