miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22640 3' -56 NC_005091.1 + 51520 0.66 0.644
Target:  5'- cAUCGCgaGCCGuagaaccGCCCccGCGCAg -3'
miRNA:   3'- -UAGCGaaCGGCuaaa---CGGGcaCGCGU- -5'
22640 3' -56 NC_005091.1 + 51274 0.66 0.610683
Target:  5'- aAUCGUc-GCCGucgcGCCCGUGgGCGa -3'
miRNA:   3'- -UAGCGaaCGGCuaaaCGGGCACgCGU- -5'
22640 3' -56 NC_005091.1 + 51707 0.67 0.560009
Target:  5'- -cCGCUucauucggcauaucaUGCCGAaucgcGCCCGUGcCGCGc -3'
miRNA:   3'- uaGCGA---------------ACGGCUaaa--CGGGCAC-GCGU- -5'
22640 3' -56 NC_005091.1 + 55225 0.68 0.534013
Target:  5'- gGUCgGCUcGuUCGAcgcgGCCCGUGCGCGg -3'
miRNA:   3'- -UAG-CGAaC-GGCUaaa-CGGGCACGCGU- -5'
22640 3' -56 NC_005091.1 + 20270 0.68 0.523306
Target:  5'- -aCGCgucGCCGcUUUGCgaguagccgCCGUGCGCGa -3'
miRNA:   3'- uaGCGaa-CGGCuAAACG---------GGCACGCGU- -5'
22640 3' -56 NC_005091.1 + 44443 0.68 0.491711
Target:  5'- -aCGCUUGCCGGUgcacccGCCaGUGcCGCu -3'
miRNA:   3'- uaGCGAACGGCUAaa----CGGgCAC-GCGu -5'
22640 3' -56 NC_005091.1 + 24024 0.69 0.481375
Target:  5'- uUCGCgu-CCGGgaUGCCCGUGCcucGCAc -3'
miRNA:   3'- uAGCGaacGGCUaaACGGGCACG---CGU- -5'
22640 3' -56 NC_005091.1 + 34261 0.69 0.471145
Target:  5'- aGUCGCgcggcaUUGCCGAUaucgUGUCCGgccugaaggacaUGCGCAu -3'
miRNA:   3'- -UAGCG------AACGGCUAa---ACGGGC------------ACGCGU- -5'
22640 3' -56 NC_005091.1 + 52635 0.69 0.451024
Target:  5'- cGUCGC--GCCGAU---CCCGUGUGCGc -3'
miRNA:   3'- -UAGCGaaCGGCUAaacGGGCACGCGU- -5'
22640 3' -56 NC_005091.1 + 36523 0.71 0.358135
Target:  5'- uAUCGUgcGCCGAUa---CCGUGCGCAu -3'
miRNA:   3'- -UAGCGaaCGGCUAaacgGGCACGCGU- -5'
22640 3' -56 NC_005091.1 + 48790 0.71 0.332189
Target:  5'- uGUCGCUcgugcagUGCCGcAUUggccGgCCGUGCGCAc -3'
miRNA:   3'- -UAGCGA-------ACGGC-UAAa---CgGGCACGCGU- -5'
22640 3' -56 NC_005091.1 + 51047 1.06 0.001121
Target:  5'- gAUCGCUUGCCGAUUUGCCCGUGCGCAc -3'
miRNA:   3'- -UAGCGAACGGCUAAACGGGCACGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.