miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22640 5' -58.7 NC_005091.1 + 13137 0.66 0.512552
Target:  5'- -aUGCUGACGgGGCcguAUGGCuGGUc -3'
miRNA:   3'- caGCGACUGCgCCGuu-UGCCGcCCAu -5'
22640 5' -58.7 NC_005091.1 + 55219 0.66 0.492137
Target:  5'- cUCGUUcGACGCGGCccguGCGcGgGGGUc -3'
miRNA:   3'- cAGCGA-CUGCGCCGuu--UGC-CgCCCAu -5'
22640 5' -58.7 NC_005091.1 + 46021 0.67 0.48207
Target:  5'- -cCGCgccgGaACGCaGCGAgaGCGGCGGGg- -3'
miRNA:   3'- caGCGa---C-UGCGcCGUU--UGCCGCCCau -5'
22640 5' -58.7 NC_005091.1 + 17920 0.67 0.462244
Target:  5'- cGUCGCcucgGucgUGCGGUAGACGGCcggcgcgacGGGUGu -3'
miRNA:   3'- -CAGCGa---Cu--GCGCCGUUUGCCG---------CCCAU- -5'
22640 5' -58.7 NC_005091.1 + 53085 0.67 0.462244
Target:  5'- gGUCGCgagcauUGCGGCGAcCGuuuGCGGGUAg -3'
miRNA:   3'- -CAGCGacu---GCGCCGUUuGC---CGCCCAU- -5'
22640 5' -58.7 NC_005091.1 + 4823 0.67 0.442856
Target:  5'- -gCGCUcGGCGCGGCGgcAACGgucaaGCGGGc- -3'
miRNA:   3'- caGCGA-CUGCGCCGU--UUGC-----CGCCCau -5'
22640 5' -58.7 NC_005091.1 + 4974 0.67 0.442856
Target:  5'- aGUUGCUGGaaCGGCGAuaACGGUgcucGGGUAu -3'
miRNA:   3'- -CAGCGACUgcGCCGUU--UGCCG----CCCAU- -5'
22640 5' -58.7 NC_005091.1 + 26686 0.69 0.3702
Target:  5'- cUUGCUGcUGCGGCGGcCGGCGGcGg- -3'
miRNA:   3'- cAGCGACuGCGCCGUUuGCCGCC-Cau -5'
22640 5' -58.7 NC_005091.1 + 40713 0.69 0.3702
Target:  5'- uUCGC-GACGCGGCuguACGGCGucgaGUAc -3'
miRNA:   3'- cAGCGaCUGCGCCGuu-UGCCGCc---CAU- -5'
22640 5' -58.7 NC_005091.1 + 53535 0.7 0.329113
Target:  5'- -cCGCacgGGCGCGGCuuucUGGCGGGa- -3'
miRNA:   3'- caGCGa--CUGCGCCGuuu-GCCGCCCau -5'
22640 5' -58.7 NC_005091.1 + 53049 0.72 0.2446
Target:  5'- uUCGCUGAuCGCGGCGAGCauGGCGa--- -3'
miRNA:   3'- cAGCGACU-GCGCCGUUUG--CCGCccau -5'
22640 5' -58.7 NC_005091.1 + 384 0.74 0.178914
Target:  5'- cGUCGUgaAgGCGGcCAAGCGGCGGGg- -3'
miRNA:   3'- -CAGCGacUgCGCC-GUUUGCCGCCCau -5'
22640 5' -58.7 NC_005091.1 + 57778 0.74 0.178914
Target:  5'- cGUCGUgaAgGCGGcCAAGCGGCGGGg- -3'
miRNA:   3'- -CAGCGacUgCGCC-GUUUGCCGCCCau -5'
22640 5' -58.7 NC_005091.1 + 51010 1.06 0.000762
Target:  5'- gGUCGCUGACGCGGCAAACGGCGGGUAu -3'
miRNA:   3'- -CAGCGACUGCGCCGUUUGCCGCCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.