miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22641 5' -55.2 NC_005091.1 + 51279 1.11 0.000973
Target:  5'- cCCUAAAUCGUCGCCGUCGCGCCCGUGg -3'
miRNA:   3'- -GGAUUUAGCAGCGGCAGCGCGGGCAC- -5'
22641 5' -55.2 NC_005091.1 + 16202 0.8 0.14515
Target:  5'- aCUucGUCGcgccCGCCGUCGCGCCCGg- -3'
miRNA:   3'- gGAuuUAGCa---GCGGCAGCGCGGGCac -5'
22641 5' -55.2 NC_005091.1 + 15144 0.77 0.2107
Target:  5'- aCUucGUCGUuccUGCCGUUGCGCCCGg- -3'
miRNA:   3'- gGAuuUAGCA---GCGGCAGCGCGGGCac -5'
22641 5' -55.2 NC_005091.1 + 4206 0.75 0.278816
Target:  5'- uCCU--GUCGUUGcCCGgcggCGCGCCCGUc -3'
miRNA:   3'- -GGAuuUAGCAGC-GGCa---GCGCGGGCAc -5'
22641 5' -55.2 NC_005091.1 + 10099 0.72 0.425711
Target:  5'- ----cGUgGUCGCCGUCGUGCCgGg- -3'
miRNA:   3'- ggauuUAgCAGCGGCAGCGCGGgCac -5'
22641 5' -55.2 NC_005091.1 + 23976 0.71 0.454318
Target:  5'- gCUGAAUCGUUGCCGaCGCGCgUCa-- -3'
miRNA:   3'- gGAUUUAGCAGCGGCaGCGCG-GGcac -5'
22641 5' -55.2 NC_005091.1 + 28349 0.71 0.483934
Target:  5'- aCCUGAAgCGUCGUCGUCaCGuCCUGUu -3'
miRNA:   3'- -GGAUUUaGCAGCGGCAGcGC-GGGCAc -5'
22641 5' -55.2 NC_005091.1 + 57905 0.71 0.504183
Target:  5'- gCUGc-UCGaccugCGCCGUCGCGUgCGUGa -3'
miRNA:   3'- gGAUuuAGCa----GCGGCAGCGCGgGCAC- -5'
22641 5' -55.2 NC_005091.1 + 511 0.71 0.504183
Target:  5'- gCUGc-UCGaccugCGCCGUCGCGUgCGUGa -3'
miRNA:   3'- gGAUuuAGCa----GCGGCAGCGCGgGCAC- -5'
22641 5' -55.2 NC_005091.1 + 45237 0.69 0.57756
Target:  5'- gCUcuGUCGUcuaccggcCGCgCGUUGCGCCCGg- -3'
miRNA:   3'- gGAuuUAGCA--------GCG-GCAGCGCGGGCac -5'
22641 5' -55.2 NC_005091.1 + 9522 0.69 0.588274
Target:  5'- ---uGAUCaGUuccCGCCGUCGUGCCCGc- -3'
miRNA:   3'- ggauUUAG-CA---GCGGCAGCGCGGGCac -5'
22641 5' -55.2 NC_005091.1 + 49574 0.69 0.606564
Target:  5'- gCCUGccgcucGUCGUguucgcaauuggccUGCuCGUCGCGCUCGUGc -3'
miRNA:   3'- -GGAUu-----UAGCA--------------GCG-GCAGCGCGGGCAC- -5'
22641 5' -55.2 NC_005091.1 + 12463 0.68 0.653
Target:  5'- gCCguAGUCGcCGCCGUCgcacuggccGCGCUCGUc -3'
miRNA:   3'- -GGauUUAGCaGCGGCAG---------CGCGGGCAc -5'
22641 5' -55.2 NC_005091.1 + 42656 0.68 0.653
Target:  5'- gCCcGAcgCGUCGCCGUCGCGgaagaaaaaCuuGUc -3'
miRNA:   3'- -GGaUUuaGCAGCGGCAGCGC---------GggCAc -5'
22641 5' -55.2 NC_005091.1 + 12579 0.68 0.653
Target:  5'- aUUGAAUcugCGUgGCCGauucgCGCGCCCGg- -3'
miRNA:   3'- gGAUUUA---GCAgCGGCa----GCGCGGGCac -5'
22641 5' -55.2 NC_005091.1 + 31094 0.68 0.662701
Target:  5'- gCCgUAGAUCGUCGCCaUUGCGCacauccauucgauCCGg- -3'
miRNA:   3'- -GG-AUUUAGCAGCGGcAGCGCG-------------GGCac -5'
22641 5' -55.2 NC_005091.1 + 51716 0.68 0.663778
Target:  5'- aCUGGAaagccgcuucauUCGgcauaucaUGCCGaaUCGCGCCCGUGc -3'
miRNA:   3'- gGAUUU------------AGCa-------GCGGC--AGCGCGGGCAC- -5'
22641 5' -55.2 NC_005091.1 + 12728 0.67 0.694836
Target:  5'- uCCgu-GUUGuUCGUCGUCGCGuucauucgcuggcCCCGUGc -3'
miRNA:   3'- -GGauuUAGC-AGCGGCAGCGC-------------GGGCAC- -5'
22641 5' -55.2 NC_005091.1 + 54108 0.67 0.6959
Target:  5'- --gAAAaCGUgCGCCGUCGCGCUgGa- -3'
miRNA:   3'- ggaUUUaGCA-GCGGCAGCGCGGgCac -5'
22641 5' -55.2 NC_005091.1 + 6728 0.67 0.706502
Target:  5'- -------gGUCGCCGUCGCcaacaagaagcaGCCCGg- -3'
miRNA:   3'- ggauuuagCAGCGGCAGCG------------CGGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.