Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22641 | 5' | -55.2 | NC_005091.1 | + | 16202 | 0.8 | 0.14515 |
Target: 5'- aCUucGUCGcgccCGCCGUCGCGCCCGg- -3' miRNA: 3'- gGAuuUAGCa---GCGGCAGCGCGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 45699 | 0.67 | 0.727486 |
Target: 5'- uCCUGuacgCGUCgGCCG-CGCGCCgCGc- -3' miRNA: 3'- -GGAUuua-GCAG-CGGCaGCGCGG-GCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 29858 | 0.67 | 0.737845 |
Target: 5'- uCCgGAAaCGUCaccgaGCCGUCGCGCUgcaaUGUGa -3' miRNA: 3'- -GGaUUUaGCAG-----CGGCAGCGCGG----GCAC- -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 44536 | 0.66 | 0.758245 |
Target: 5'- gCUGc--CGUCGCCuucGUCGCcGCCCGc- -3' miRNA: 3'- gGAUuuaGCAGCGG---CAGCG-CGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 17621 | 0.66 | 0.758245 |
Target: 5'- aCCUcGAugaucUCGUCGCCGauaaUCGCggccauGCCCGg- -3' miRNA: 3'- -GGAuUU-----AGCAGCGGC----AGCG------CGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 39974 | 0.66 | 0.768264 |
Target: 5'- cCCUucGAcgCGUCGCCGaucUUGCGCaggGUGa -3' miRNA: 3'- -GGA--UUuaGCAGCGGC---AGCGCGgg-CAC- -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 18451 | 0.66 | 0.778149 |
Target: 5'- --gGAAUUGUCGCCGggUCGUaGUCCGa- -3' miRNA: 3'- ggaUUUAGCAGCGGC--AGCG-CGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 44771 | 0.66 | 0.778149 |
Target: 5'- gCCgccguGGUCGUUGCCuUCGUGCCUu-- -3' miRNA: 3'- -GGau---UUAGCAGCGGcAGCGCGGGcac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 32967 | 0.66 | 0.787887 |
Target: 5'- uCCgcgAGAgcggCGUUGa-GUUGCGCCCGUa -3' miRNA: 3'- -GGa--UUUa---GCAGCggCAGCGCGGGCAc -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 6728 | 0.67 | 0.706502 |
Target: 5'- -------gGUCGCCGUCGCcaacaagaagcaGCCCGg- -3' miRNA: 3'- ggauuuagCAGCGGCAGCG------------CGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 12728 | 0.67 | 0.694836 |
Target: 5'- uCCgu-GUUGuUCGUCGUCGCGuucauucgcuggcCCCGUGc -3' miRNA: 3'- -GGauuUAGC-AGCGGCAGCGC-------------GGGCAC- -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 31094 | 0.68 | 0.662701 |
Target: 5'- gCCgUAGAUCGUCGCCaUUGCGCacauccauucgauCCGg- -3' miRNA: 3'- -GG-AUUUAGCAGCGGcAGCGCG-------------GGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 15144 | 0.77 | 0.2107 |
Target: 5'- aCUucGUCGUuccUGCCGUUGCGCCCGg- -3' miRNA: 3'- gGAuuUAGCA---GCGGCAGCGCGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 4206 | 0.75 | 0.278816 |
Target: 5'- uCCU--GUCGUUGcCCGgcggCGCGCCCGUc -3' miRNA: 3'- -GGAuuUAGCAGC-GGCa---GCGCGGGCAc -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 23976 | 0.71 | 0.454318 |
Target: 5'- gCUGAAUCGUUGCCGaCGCGCgUCa-- -3' miRNA: 3'- gGAUUUAGCAGCGGCaGCGCG-GGcac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 28349 | 0.71 | 0.483934 |
Target: 5'- aCCUGAAgCGUCGUCGUCaCGuCCUGUu -3' miRNA: 3'- -GGAUUUaGCAGCGGCAGcGC-GGGCAc -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 45237 | 0.69 | 0.57756 |
Target: 5'- gCUcuGUCGUcuaccggcCGCgCGUUGCGCCCGg- -3' miRNA: 3'- gGAuuUAGCA--------GCG-GCAGCGCGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 9522 | 0.69 | 0.588274 |
Target: 5'- ---uGAUCaGUuccCGCCGUCGUGCCCGc- -3' miRNA: 3'- ggauUUAG-CA---GCGGCAGCGCGGGCac -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 42656 | 0.68 | 0.653 |
Target: 5'- gCCcGAcgCGUCGCCGUCGCGgaagaaaaaCuuGUc -3' miRNA: 3'- -GGaUUuaGCAGCGGCAGCGC---------GggCAc -5' |
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22641 | 5' | -55.2 | NC_005091.1 | + | 12579 | 0.68 | 0.653 |
Target: 5'- aUUGAAUcugCGUgGCCGauucgCGCGCCCGg- -3' miRNA: 3'- gGAUUUA---GCAgCGGCa----GCGCGGGCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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