miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22644 3' -60.5 NC_005091.1 + 26020 0.66 0.507164
Target:  5'- cCUGCACGCCgaCGuACGCCGuGGcGAGcgCg -3'
miRNA:   3'- -GGCGUGCGG--GCcUGCGGC-CC-UUCuaG- -5'
22644 3' -60.5 NC_005091.1 + 15068 0.66 0.507164
Target:  5'- gCCGCAUGCgaaccaCCGGAUGCgcccaugacaggCGGGAGcGGUg -3'
miRNA:   3'- -GGCGUGCG------GGCCUGCG------------GCCCUU-CUAg -5'
22644 3' -60.5 NC_005091.1 + 14829 0.66 0.507164
Target:  5'- gCCGCAUGCgaaccaCCGGAUGCgcccaugacaggCGGGAGcGGUg -3'
miRNA:   3'- -GGCGUGCG------GGCCUGCG------------GCCCUU-CUAg -5'
22644 3' -60.5 NC_005091.1 + 9309 0.66 0.507164
Target:  5'- gCCGUGCGaaUGGuuccCGCCGGGAAaAUCc -3'
miRNA:   3'- -GGCGUGCggGCCu---GCGGCCCUUcUAG- -5'
22644 3' -60.5 NC_005091.1 + 34518 0.66 0.497276
Target:  5'- gCCGacCACGCCaaggCGGAUcaGaCCGGuGAAGGUCg -3'
miRNA:   3'- -GGC--GUGCGG----GCCUG--C-GGCC-CUUCUAG- -5'
22644 3' -60.5 NC_005091.1 + 18874 0.66 0.497276
Target:  5'- aCCGUgaagACGcCCCGGaACGCCGGcacGAUUc -3'
miRNA:   3'- -GGCG----UGC-GGGCC-UGCGGCCcuuCUAG- -5'
22644 3' -60.5 NC_005091.1 + 35768 0.66 0.496292
Target:  5'- cCCGUgacACcuuCCCGGcCGCCGGaaucgcaGAAGGUCa -3'
miRNA:   3'- -GGCG---UGc--GGGCCuGCGGCC-------CUUCUAG- -5'
22644 3' -60.5 NC_005091.1 + 22288 0.66 0.496292
Target:  5'- -aGCACGUCCaguaGCCGGGAauacugaaccgucAGGUCg -3'
miRNA:   3'- ggCGUGCGGGccugCGGCCCU-------------UCUAG- -5'
22644 3' -60.5 NC_005091.1 + 42243 0.66 0.487475
Target:  5'- cCCgGCACGUCgGGGaauaaccgUGCCGGGgcGAa- -3'
miRNA:   3'- -GG-CGUGCGGgCCU--------GCGGCCCuuCUag -5'
22644 3' -60.5 NC_005091.1 + 47879 0.66 0.485526
Target:  5'- -aGUACGCCgGGugcgguuuguaGCCGGGuccAGAUCc -3'
miRNA:   3'- ggCGUGCGGgCCug---------CGGCCCu--UCUAG- -5'
22644 3' -60.5 NC_005091.1 + 24104 0.66 0.477767
Target:  5'- -gGCACGggcauCCCGGACGC---GAAGAUCg -3'
miRNA:   3'- ggCGUGC-----GGGCCUGCGgccCUUCUAG- -5'
22644 3' -60.5 NC_005091.1 + 4409 0.66 0.477767
Target:  5'- -gGCACGCCCa---GCCGGGAaacaGGAa- -3'
miRNA:   3'- ggCGUGCGGGccugCGGCCCU----UCUag -5'
22644 3' -60.5 NC_005091.1 + 14379 0.66 0.477767
Target:  5'- cCCGCcUGaCCCGGACaGCCGacGAGGAa- -3'
miRNA:   3'- -GGCGuGC-GGGCCUG-CGGCc-CUUCUag -5'
22644 3' -60.5 NC_005091.1 + 9752 0.66 0.468155
Target:  5'- gUCGCugGCCCa---GCCGGGAcacgAGAg- -3'
miRNA:   3'- -GGCGugCGGGccugCGGCCCU----UCUag -5'
22644 3' -60.5 NC_005091.1 + 17834 0.66 0.467199
Target:  5'- uUGCGCGCCaCGGcgacaaacguuccGCuaucgGCCGGGAccugugcgAGAUCg -3'
miRNA:   3'- gGCGUGCGG-GCC-------------UG-----CGGCCCU--------UCUAG- -5'
22644 3' -60.5 NC_005091.1 + 2953 0.66 0.458643
Target:  5'- cCCGCACGUaCGaugaaaGCGCCGGGAcuGUUa -3'
miRNA:   3'- -GGCGUGCGgGCc-----UGCGGCCCUucUAG- -5'
22644 3' -60.5 NC_005091.1 + 29551 0.66 0.458643
Target:  5'- gUCGCuCGCCCGGuuCGCCgaaccGGGAcAGAc- -3'
miRNA:   3'- -GGCGuGCGGGCCu-GCGG-----CCCU-UCUag -5'
22644 3' -60.5 NC_005091.1 + 645 0.67 0.449235
Target:  5'- aCCGguUGCggUCGGAUGCuCGcGGAGGAUa -3'
miRNA:   3'- -GGCguGCG--GGCCUGCG-GC-CCUUCUAg -5'
22644 3' -60.5 NC_005091.1 + 58039 0.67 0.449235
Target:  5'- aCCGguUGCggUCGGAUGCuCGcGGAGGAUa -3'
miRNA:   3'- -GGCguGCG--GGCCUGCG-GC-CCUUCUAg -5'
22644 3' -60.5 NC_005091.1 + 54098 0.67 0.4483
Target:  5'- gCCGuCGCGCUggaaaagCGaGACGCCGGccgcuGGAUCa -3'
miRNA:   3'- -GGC-GUGCGG-------GC-CUGCGGCCcu---UCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.