miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22644 5' -58 NC_005091.1 + 37874 0.66 0.562312
Target:  5'- -gGCUGCGCGcGU-GCGgGAAGcGCc -3'
miRNA:   3'- uaCGACGCGCuCAgCGCgCUUCaCGa -5'
22644 5' -58 NC_005091.1 + 41181 0.66 0.551575
Target:  5'- gGUGCUGa-CGGGgcggUGCaCGAAGUGCUg -3'
miRNA:   3'- -UACGACgcGCUCa---GCGcGCUUCACGA- -5'
22644 5' -58 NC_005091.1 + 28776 0.66 0.5409
Target:  5'- -gGCcccgGCGUGuGUCGUGCGcccgcagaAGGUGCUu -3'
miRNA:   3'- uaCGa---CGCGCuCAGCGCGC--------UUCACGA- -5'
22644 5' -58 NC_005091.1 + 50363 0.66 0.539837
Target:  5'- uUGCUuucgaacGCGCGGgccgccaagcGUCGCGCGA--UGCUg -3'
miRNA:   3'- uACGA-------CGCGCU----------CAGCGCGCUucACGA- -5'
22644 5' -58 NC_005091.1 + 51503 0.66 0.530296
Target:  5'- -cGCUGCGCGugcAGUCGCGauucAAGcUGCc -3'
miRNA:   3'- uaCGACGCGC---UCAGCGCgc--UUC-ACGa -5'
22644 5' -58 NC_005091.1 + 26577 0.67 0.458547
Target:  5'- -cGCUGgGUGAGUCGUuCGAAGUcccgGCc -3'
miRNA:   3'- uaCGACgCGCUCAGCGcGCUUCA----CGa -5'
22644 5' -58 NC_005091.1 + 10346 0.67 0.448715
Target:  5'- --aCUGCGCGuGUCGCGCGcccgacaucGAGgacgGCg -3'
miRNA:   3'- uacGACGCGCuCAGCGCGC---------UUCa---CGa -5'
22644 5' -58 NC_005091.1 + 30 0.69 0.374557
Target:  5'- -cGCaUGCGCGAGUCGgGCGuuccuaucauGGG-GCUg -3'
miRNA:   3'- uaCG-ACGCGCUCAGCgCGC----------UUCaCGA- -5'
22644 5' -58 NC_005091.1 + 57424 0.69 0.374557
Target:  5'- -cGCaUGCGCGAGUCGgGCGuuccuaucauGGG-GCUg -3'
miRNA:   3'- uaCG-ACGCGCUCAGCgCGC----------UUCaCGA- -5'
22644 5' -58 NC_005091.1 + 36303 0.7 0.324651
Target:  5'- -cGCaaUGCGCGAG-CGuCGCGgcGUGCc -3'
miRNA:   3'- uaCG--ACGCGCUCaGC-GCGCuuCACGa -5'
22644 5' -58 NC_005091.1 + 30446 0.7 0.301616
Target:  5'- -cGCUaCGCGGGUCGCGUu--GUGCUu -3'
miRNA:   3'- uaCGAcGCGCUCAGCGCGcuuCACGA- -5'
22644 5' -58 NC_005091.1 + 17067 0.73 0.189464
Target:  5'- -cGCUGCGCGuGcucucgaccUCgGCGCGAAGUGUa -3'
miRNA:   3'- uaCGACGCGCuC---------AG-CGCGCUUCACGa -5'
22644 5' -58 NC_005091.1 + 51842 1.06 0.000756
Target:  5'- gAUGCUGCGCGAGUCGCGCGAAGUGCUg -3'
miRNA:   3'- -UACGACGCGCUCAGCGCGCUUCACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.