miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22645 3' -56.9 NC_005091.1 + 50111 0.66 0.685613
Target:  5'- uCGUUCCaGAcuUGCG-CGCCGacuacaggGGCGCa -3'
miRNA:   3'- -GCGGGG-CUuuACGCuGCGGCa-------UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 5233 0.66 0.683484
Target:  5'- cCGCCCCGGAucacaucacugGCcGCacgGCCGUugcGGUGCg -3'
miRNA:   3'- -GCGGGGCUUua---------CGcUG---CGGCA---UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 26360 0.66 0.674949
Target:  5'- aGCCCCG----GCGGC-CCGc-GCGCg -3'
miRNA:   3'- gCGGGGCuuuaCGCUGcGGCauCGCG- -5'
22645 3' -56.9 NC_005091.1 + 29373 0.66 0.674949
Target:  5'- aGCCCCG----GCGAaaCGCUGcacgcgacggaUGGCGCg -3'
miRNA:   3'- gCGGGGCuuuaCGCU--GCGGC-----------AUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 29007 0.66 0.674949
Target:  5'- gGCCUCGA--UGcCGACGagaaCGggcaGGCGCa -3'
miRNA:   3'- gCGGGGCUuuAC-GCUGCg---GCa---UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 22744 0.66 0.674949
Target:  5'- cCGCCgCCGGccgucAGcGCGGCGUUcaGGCGCg -3'
miRNA:   3'- -GCGG-GGCU-----UUaCGCUGCGGcaUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 18883 0.66 0.674949
Target:  5'- aCGCCCCGGAAcGcCGGCacgauuccGCCG-AGCa- -3'
miRNA:   3'- -GCGGGGCUUUaC-GCUG--------CGGCaUCGcg -5'
22645 3' -56.9 NC_005091.1 + 19874 0.66 0.664246
Target:  5'- cCGCCaCUGAAccacgGUGCGGCcuucgaacccGCCucGGCGCa -3'
miRNA:   3'- -GCGG-GGCUU-----UACGCUG----------CGGcaUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 25498 0.66 0.664246
Target:  5'- aGUUCCGGAagGCGAuCGCCGauauGgGCu -3'
miRNA:   3'- gCGGGGCUUuaCGCU-GCGGCau--CgCG- -5'
22645 3' -56.9 NC_005091.1 + 53657 0.66 0.65781
Target:  5'- gCGCgCCGGgguugcgcuggcaauGGUGCGACGagGUagaaGGCGCg -3'
miRNA:   3'- -GCGgGGCU---------------UUACGCUGCggCA----UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 29879 0.66 0.653514
Target:  5'- uCGCgCUGcAAUGUGAUGCCG-AGUGa -3'
miRNA:   3'- -GCGgGGCuUUACGCUGCGGCaUCGCg -5'
22645 3' -56.9 NC_005091.1 + 20021 0.66 0.653514
Target:  5'- uCGCCaCGAAcgGCGuuaucacUGCCGUGG-GCg -3'
miRNA:   3'- -GCGGgGCUUuaCGCu------GCGGCAUCgCG- -5'
22645 3' -56.9 NC_005091.1 + 10894 0.66 0.653514
Target:  5'- uCGCUgCCGAgugcAAUGCG-CGCCuUGGcCGCg -3'
miRNA:   3'- -GCGG-GGCU----UUACGCuGCGGcAUC-GCG- -5'
22645 3' -56.9 NC_005091.1 + 13047 0.66 0.653514
Target:  5'- uCGgCCCGGAcgaccCGugGCCcacaaccugauGUAGCGCa -3'
miRNA:   3'- -GCgGGGCUUuac--GCugCGG-----------CAUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 53151 0.66 0.653514
Target:  5'- uGUCUCGc---GUGAuucCGCUGUAGCGCg -3'
miRNA:   3'- gCGGGGCuuuaCGCU---GCGGCAUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 16562 0.66 0.653514
Target:  5'- aGCCCCcgucuuuccGUGCGuaccccACGCCGUcgcucGGUGCg -3'
miRNA:   3'- gCGGGGcuu------UACGC------UGCGGCA-----UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 28776 0.66 0.653514
Target:  5'- -uCCCCGAcgagcugucAAUgGCGAucaguuCGCCGaGGCGCa -3'
miRNA:   3'- gcGGGGCU---------UUA-CGCU------GCGGCaUCGCG- -5'
22645 3' -56.9 NC_005091.1 + 36518 0.66 0.65244
Target:  5'- uGCgCCGAuaccGUGCGcauggaaGCGCCGUGcUGCg -3'
miRNA:   3'- gCGgGGCUu---UACGC-------UGCGGCAUcGCG- -5'
22645 3' -56.9 NC_005091.1 + 15988 0.66 0.636308
Target:  5'- uCGCUCUGcGAUGCGACggcuacaucggucagGCCGacaAGCGUc -3'
miRNA:   3'- -GCGGGGCuUUACGCUG---------------CGGCa--UCGCG- -5'
22645 3' -56.9 NC_005091.1 + 36344 0.66 0.632004
Target:  5'- gGCgUCGug--GCGGCGUucaucuCGUGGCGCa -3'
miRNA:   3'- gCGgGGCuuuaCGCUGCG------GCAUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.