miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22645 5' -51.6 NC_005091.1 + 10314 0.66 0.926796
Target:  5'- cGCGAGCggucguacgauuuucCCGGaagaguacuGCGCGUGUCGcgcgcccgacaucGAGGa -3'
miRNA:   3'- -CGCUCGau-------------GGCC---------UGCGUAUAGC-------------UUCC- -5'
22645 5' -51.6 NC_005091.1 + 14441 0.66 0.92328
Target:  5'- gGCGGGCaACuaCGcGACGCcUAUCGAuucgccGGGg -3'
miRNA:   3'- -CGCUCGaUG--GC-CUGCGuAUAGCU------UCC- -5'
22645 5' -51.6 NC_005091.1 + 4204 0.66 0.92328
Target:  5'- uGCG-GCgUGCCGGGCcaGCAguUGUCGAGc- -3'
miRNA:   3'- -CGCuCG-AUGGCCUG--CGU--AUAGCUUcc -5'
22645 5' -51.6 NC_005091.1 + 19979 0.66 0.917195
Target:  5'- uCGAGUgcGCCGaGGCGgGU-UCGAAGGc -3'
miRNA:   3'- cGCUCGa-UGGC-CUGCgUAuAGCUUCC- -5'
22645 5' -51.6 NC_005091.1 + 25146 0.66 0.91657
Target:  5'- aGCG-GCcgccCCGGACGCAccgaccgccgccaUAgCGAAGGc -3'
miRNA:   3'- -CGCuCGau--GGCCUGCGU-------------AUaGCUUCC- -5'
22645 5' -51.6 NC_005091.1 + 16509 0.66 0.910829
Target:  5'- gGCGAcGCUGUCGGACGCcaacAUcUCGAacccacAGGa -3'
miRNA:   3'- -CGCU-CGAUGGCCUGCG----UAuAGCU------UCC- -5'
22645 5' -51.6 NC_005091.1 + 47680 0.66 0.904185
Target:  5'- aGCaAGCUGCCGGACcugaugguugGCAUGgauugCGAAc- -3'
miRNA:   3'- -CGcUCGAUGGCCUG----------CGUAUa----GCUUcc -5'
22645 5' -51.6 NC_005091.1 + 12273 0.66 0.904185
Target:  5'- uGUGGGUccugaUGCCGGACGaCA---UGAAGGc -3'
miRNA:   3'- -CGCUCG-----AUGGCCUGC-GUauaGCUUCC- -5'
22645 5' -51.6 NC_005091.1 + 22795 0.66 0.904185
Target:  5'- aCGAGCa--CGGACGUu--UCGAAGa -3'
miRNA:   3'- cGCUCGaugGCCUGCGuauAGCUUCc -5'
22645 5' -51.6 NC_005091.1 + 37245 0.67 0.890076
Target:  5'- cCGAaaGCUgaacacGCCGGGCGCGUA-CGuGGGc -3'
miRNA:   3'- cGCU--CGA------UGGCCUGCGUAUaGCuUCC- -5'
22645 5' -51.6 NC_005091.1 + 37985 0.67 0.882618
Target:  5'- -aGAGCggAgCGGAUaGCGcAUCGAAGGc -3'
miRNA:   3'- cgCUCGa-UgGCCUG-CGUaUAGCUUCC- -5'
22645 5' -51.6 NC_005091.1 + 2800 0.68 0.858702
Target:  5'- uCGGGCUGCCGuuCGCGagagaUAUCGuccGGGu -3'
miRNA:   3'- cGCUCGAUGGCcuGCGU-----AUAGCu--UCC- -5'
22645 5' -51.6 NC_005091.1 + 22104 0.68 0.858702
Target:  5'- cGCGAGCUGCauauCGGcCGCAUGg-GAcGGc -3'
miRNA:   3'- -CGCUCGAUG----GCCuGCGUAUagCUuCC- -5'
22645 5' -51.6 NC_005091.1 + 10058 0.68 0.841542
Target:  5'- gGUGcuuGGCUgACCGGACGaggAUCGAgccGGGg -3'
miRNA:   3'- -CGC---UCGA-UGGCCUGCguaUAGCU---UCC- -5'
22645 5' -51.6 NC_005091.1 + 12785 0.68 0.839775
Target:  5'- cGCGGGauucuagcagaACCGGAaGCA-GUCGAGGGg -3'
miRNA:   3'- -CGCUCga---------UGGCCUgCGUaUAGCUUCC- -5'
22645 5' -51.6 NC_005091.1 + 24101 0.68 0.832621
Target:  5'- aCGGGCaucCCGGACGCGaagAUCGAc-- -3'
miRNA:   3'- cGCUCGau-GGCCUGCGUa--UAGCUucc -5'
22645 5' -51.6 NC_005091.1 + 45919 0.68 0.823486
Target:  5'- cCGAGUUGCCGGuguuGCGCcgcGUCGAugcgcAGGc -3'
miRNA:   3'- cGCUCGAUGGCC----UGCGua-UAGCU-----UCC- -5'
22645 5' -51.6 NC_005091.1 + 17541 0.68 0.814146
Target:  5'- uGCGAagauGCgcgGCCGGGaGCGUGUCGAc-- -3'
miRNA:   3'- -CGCU----CGa--UGGCCUgCGUAUAGCUucc -5'
22645 5' -51.6 NC_005091.1 + 31025 0.69 0.785003
Target:  5'- gGUGAGC-GCCGGAuCGCGgc-CGAAGu -3'
miRNA:   3'- -CGCUCGaUGGCCU-GCGUauaGCUUCc -5'
22645 5' -51.6 NC_005091.1 + 18412 0.69 0.772922
Target:  5'- uGCGAGauguucagcagGCCGGACGUGUaGUCGAAa- -3'
miRNA:   3'- -CGCUCga---------UGGCCUGCGUA-UAGCUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.