miRNA display CGI


Results 1 - 20 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22646 3' -68 NC_005091.1 + 37162 0.76 0.038412
Target:  5'- uACGCGCCCggCGUGUucagcuuucgguacuUGGCGGCGGCCuGCg -3'
miRNA:   3'- -UGCGCGGG--GCGCG---------------GCCGCUGCCGG-CG- -5'
22646 3' -68 NC_005091.1 + 40566 0.7 0.117484
Target:  5'- -gGUaUCCCGCGCCGaGC-ACGGCCGg -3'
miRNA:   3'- ugCGcGGGGCGCGGC-CGcUGCCGGCg -5'
22646 3' -68 NC_005091.1 + 51574 0.7 0.117484
Target:  5'- uUGUGUCgUGCGUCGcGUGACGGgCGCg -3'
miRNA:   3'- uGCGCGGgGCGCGGC-CGCUGCCgGCG- -5'
22646 3' -68 NC_005091.1 + 1604 0.7 0.117184
Target:  5'- aGCGCGCCUacgcauaUGUGCCGGCuucCGuGCUGCu -3'
miRNA:   3'- -UGCGCGGG-------GCGCGGCCGcu-GC-CGGCG- -5'
22646 3' -68 NC_005091.1 + 28430 0.7 0.111618
Target:  5'- uCGaGCaUCGUGCUGGCGACGGCCa- -3'
miRNA:   3'- uGCgCGgGGCGCGGCCGCUGCCGGcg -5'
22646 3' -68 NC_005091.1 + 16220 0.71 0.097372
Target:  5'- uCGCGCCCgGaucagggacgaggcCGCCGGCaugcGAUGcGCCGCu -3'
miRNA:   3'- uGCGCGGGgC--------------GCGGCCG----CUGC-CGGCG- -5'
22646 3' -68 NC_005091.1 + 26700 0.71 0.095624
Target:  5'- uACGCGauggCCGCGCCcuCGACGGaCCGCu -3'
miRNA:   3'- -UGCGCgg--GGCGCGGccGCUGCC-GGCG- -5'
22646 3' -68 NC_005091.1 + 50706 0.71 0.092937
Target:  5'- aGCGuCGCCaugcuuguaCCGCuCCGGauagccgcgcgcaCGACGGCCGCa -3'
miRNA:   3'- -UGC-GCGG---------GGCGcGGCC-------------GCUGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 52058 0.71 0.09174
Target:  5'- uACGCGCCgCGCgcuucgagauauuccGCCgcauuGGCG-CGGCCGUa -3'
miRNA:   3'- -UGCGCGGgGCG---------------CGG-----CCGCuGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 45714 0.71 0.090792
Target:  5'- cCGCGCgCCGCGCCGGCuacugcucuuccGAUGcaccgaGCCGUu -3'
miRNA:   3'- uGCGCGgGGCGCGGCCG------------CUGC------CGGCG- -5'
22646 3' -68 NC_005091.1 + 5198 0.71 0.090792
Target:  5'- gUGCGCaUUCGCGCaCGGUGcaaggagugcaACGGCCGCc -3'
miRNA:   3'- uGCGCG-GGGCGCG-GCCGC-----------UGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 8858 0.71 0.090792
Target:  5'- -gGCGCUgCUGCGCUGGCGAUGaacgucguacGCCGUg -3'
miRNA:   3'- ugCGCGG-GGCGCGGCCGCUGC----------CGGCG- -5'
22646 3' -68 NC_005091.1 + 12375 0.72 0.081816
Target:  5'- aGCGCGgCCaguGCGaCGGCGgcgacuACGGCCGCc -3'
miRNA:   3'- -UGCGCgGGg--CGCgGCCGC------UGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 9242 0.72 0.079707
Target:  5'- uGCG-GCCCUGCGaagGGCGAcCGGCCGg -3'
miRNA:   3'- -UGCgCGGGGCGCgg-CCGCU-GCCGGCg -5'
22646 3' -68 NC_005091.1 + 28048 0.72 0.069923
Target:  5'- gAUGgGCUUCGUGUCGGUGAuguCGGCUGCa -3'
miRNA:   3'- -UGCgCGGGGCGCGGCCGCU---GCCGGCG- -5'
22646 3' -68 NC_005091.1 + 814 0.73 0.062938
Target:  5'- cUGCGCUgCCGCGUgGGUGuACGGCgGCg -3'
miRNA:   3'- uGCGCGG-GGCGCGgCCGC-UGCCGgCG- -5'
22646 3' -68 NC_005091.1 + 25117 0.73 0.062773
Target:  5'- gACGCGCCggcugcaUCGaCGcCCGGUGcaGCGGCCGCc -3'
miRNA:   3'- -UGCGCGG-------GGC-GC-GGCCGC--UGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 48520 0.74 0.049602
Target:  5'- uCGCGCCU--CGCCGGaugggacccCGACGGCCGCc -3'
miRNA:   3'- uGCGCGGGgcGCGGCC---------GCUGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 54980 0.75 0.041172
Target:  5'- cUGCGCCCCuCGuCCGGCcgGGCGGcCCGCc -3'
miRNA:   3'- uGCGCGGGGcGC-GGCCG--CUGCC-GGCG- -5'
22646 3' -68 NC_005091.1 + 14520 0.76 0.036026
Target:  5'- aGCGUGCCgCuCGaUGCCggGGCGACGGCUGCu -3'
miRNA:   3'- -UGCGCGG-G-GC-GCGG--CCGCUGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.