miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22646 3' -68 NC_005091.1 + 55653 0.67 0.195745
Target:  5'- aGCGCGUggaCCGCGCUGaauuCGACGGCguucaucaggccuucCGCg -3'
miRNA:   3'- -UGCGCGg--GGCGCGGCc---GCUGCCG---------------GCG- -5'
22646 3' -68 NC_005091.1 + 33286 0.67 0.195745
Target:  5'- uACGCcgGCCUCGUacaggacaugaagcaGCUcGCGGCGGCCGa -3'
miRNA:   3'- -UGCG--CGGGGCG---------------CGGcCGCUGCCGGCg -5'
22646 3' -68 NC_005091.1 + 35157 0.67 0.193845
Target:  5'- -gGCGCCgCCGCgagguacuGCCGGCa--GGuuGCa -3'
miRNA:   3'- ugCGCGG-GGCG--------CGGCCGcugCCggCG- -5'
22646 3' -68 NC_005091.1 + 55890 0.67 0.193845
Target:  5'- uCGCGUacuugCCCGagcaGUCGGCG-CaGCCGCa -3'
miRNA:   3'- uGCGCG-----GGGCg---CGGCCGCuGcCGGCG- -5'
22646 3' -68 NC_005091.1 + 31422 0.67 0.193372
Target:  5'- aGCuCGCCCCguucgucGCGCCGaacGUGcaaGGCCGCg -3'
miRNA:   3'- -UGcGCGGGG-------CGCGGC---CGCug-CCGGCG- -5'
22646 3' -68 NC_005091.1 + 6453 0.67 0.193372
Target:  5'- gUGCGCgCUGCGCUGaaggaagcaggcGCGACGGauggcgaacgcauCCGCa -3'
miRNA:   3'- uGCGCGgGGCGCGGC------------CGCUGCC-------------GGCG- -5'
22646 3' -68 NC_005091.1 + 53658 0.67 0.189164
Target:  5'- gGCGCGCCggggUUGCGCUGGCaAUGG-UGCg -3'
miRNA:   3'- -UGCGCGG----GGCGCGGCCGcUGCCgGCG- -5'
22646 3' -68 NC_005091.1 + 13468 0.67 0.189164
Target:  5'- -aGCGCUaggCCGCGauacucgaaUGGCGACGGUgCGCc -3'
miRNA:   3'- ugCGCGG---GGCGCg--------GCCGCUGCCG-GCG- -5'
22646 3' -68 NC_005091.1 + 23463 0.67 0.189164
Target:  5'- gGCG-GCgCUGCGUCGGCugcccCGGCUGCc -3'
miRNA:   3'- -UGCgCGgGGCGCGGCCGcu---GCCGGCG- -5'
22646 3' -68 NC_005091.1 + 46014 0.67 0.184583
Target:  5'- uCGCGCaCCGCGCCGGaacgcagcgaGAgCGGCgGg -3'
miRNA:   3'- uGCGCGgGGCGCGGCCg---------CU-GCCGgCg -5'
22646 3' -68 NC_005091.1 + 679 0.67 0.184583
Target:  5'- uACGCGgaCUGCGCCGcGCGAau-CCGCa -3'
miRNA:   3'- -UGCGCggGGCGCGGC-CGCUgccGGCG- -5'
22646 3' -68 NC_005091.1 + 4660 0.67 0.184583
Target:  5'- cGCGCaGCUCCGCGCgucguuuugGGCcGgGGCCGUc -3'
miRNA:   3'- -UGCG-CGGGGCGCGg--------CCGcUgCCGGCG- -5'
22646 3' -68 NC_005091.1 + 21658 0.67 0.184583
Target:  5'- aACGuCGCCCCauGCGCCGcauuCG-CuGCCGCa -3'
miRNA:   3'- -UGC-GCGGGG--CGCGGCc---GCuGcCGGCG- -5'
22646 3' -68 NC_005091.1 + 30520 0.67 0.1801
Target:  5'- aACGCGaCCCGCGUagcguaGGUcauCGGCCGg -3'
miRNA:   3'- -UGCGCgGGGCGCGg-----CCGcu-GCCGGCg -5'
22646 3' -68 NC_005091.1 + 30207 0.67 0.179657
Target:  5'- aGCGUcgGCCUCGgGCCuguaagcauggucGGCGACuucGCCGCc -3'
miRNA:   3'- -UGCG--CGGGGCgCGG-------------CCGCUGc--CGGCG- -5'
22646 3' -68 NC_005091.1 + 49520 0.67 0.178334
Target:  5'- aACGCGCCa-GC-CaCGGaaccgacaauguaGACGGCCGCg -3'
miRNA:   3'- -UGCGCGGggCGcG-GCCg------------CUGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 31874 0.67 0.175714
Target:  5'- cCGUGUCgUCGCGCuCGuCGGCGGCCuGCu -3'
miRNA:   3'- uGCGCGG-GGCGCG-GCcGCUGCCGG-CG- -5'
22646 3' -68 NC_005091.1 + 33631 0.67 0.171848
Target:  5'- cCGCGUCUgGC-CCGGCGGCaucgggacuucaccaGCCGCg -3'
miRNA:   3'- uGCGCGGGgCGcGGCCGCUGc--------------CGGCG- -5'
22646 3' -68 NC_005091.1 + 54267 0.67 0.171423
Target:  5'- aACGCGUUgCCGauCGCgCGGUcuuccuGAUGGCCGCa -3'
miRNA:   3'- -UGCGCGG-GGC--GCG-GCCG------CUGCCGGCG- -5'
22646 3' -68 NC_005091.1 + 4821 0.67 0.167226
Target:  5'- uCGCGCUCgGCGCggCGGCaACGGUCaaGCg -3'
miRNA:   3'- uGCGCGGGgCGCG--GCCGcUGCCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.