Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22646 | 5' | -59.1 | NC_005091.1 | + | 52116 | 0.69 | 0.310658 |
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Target: 5'- -gGCGGCCGuCGCCGGcGCGgggcgcguuGCGGAc- -3' miRNA: 3'- uaUGCCGGC-GCGGUUaCGC---------CGCCUua -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 24882 | 0.7 | 0.281377 |
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Target: 5'- -gGCGGCCuGCGCagca-CGGCGGAAUu -3' miRNA: 3'- uaUGCCGG-CGCGguuacGCCGCCUUA- -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 53460 | 0.7 | 0.267577 |
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Target: 5'- -gAaaGCCGCGCCcGUGCGGCaagcGGAAg -3' miRNA: 3'- uaUgcCGGCGCGGuUACGCCG----CCUUa -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 2348 | 0.7 | 0.267577 |
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Target: 5'- -gACGGUCguGCGCCAgAUGCGGaGGGAUg -3' miRNA: 3'- uaUGCCGG--CGCGGU-UACGCCgCCUUA- -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 30307 | 0.71 | 0.241624 |
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Target: 5'- -aACGGCUuGC-CCGGUGCGGCGuGAAc -3' miRNA: 3'- uaUGCCGG-CGcGGUUACGCCGC-CUUa -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 22826 | 0.71 | 0.235472 |
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Target: 5'- -aAC-GCCGCGCUGAcggccgGCGGCGGAAc -3' miRNA: 3'- uaUGcCGGCGCGGUUa-----CGCCGCCUUa -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 21708 | 0.74 | 0.145696 |
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Target: 5'- -aACGGCCGCccGCCGGucgauccgcuUGCGGgGGAGUa -3' miRNA: 3'- uaUGCCGGCG--CGGUU----------ACGCCgCCUUA- -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 48700 | 0.75 | 0.113605 |
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Target: 5'- -cACGGCCG-GCCAAUGCGGCa---- -3' miRNA: 3'- uaUGCCGGCgCGGUUACGCCGccuua -5' |
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| 22646 | 5' | -59.1 | NC_005091.1 | + | 52163 | 0.92 | 0.006579 |
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Target: 5'- cAUACGGCCGCGCCAAUGCGGCGa--- -3' miRNA: 3'- -UAUGCCGGCGCGGUUACGCCGCcuua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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