miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22647 5' -62.5 NC_005091.1 + 15349 0.66 0.398279
Target:  5'- cGGUgaaGCGCCCacgGacggccaacgguacaCGCGCggcgGCAGCGGGa -3'
miRNA:   3'- -CCGag-CGCGGG---C---------------GCGCGa---UGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 18299 0.66 0.394819
Target:  5'- cGGCUCGCauguuUCCGaCGUuCUGCGcGCGGAc -3'
miRNA:   3'- -CCGAGCGc----GGGC-GCGcGAUGU-CGCCU- -5'
22647 5' -62.5 NC_005091.1 + 19620 0.66 0.377814
Target:  5'- cGCUCG-GCCCGaaaGCGCaGCAacCGGAc -3'
miRNA:   3'- cCGAGCgCGGGCg--CGCGaUGUc-GCCU- -5'
22647 5' -62.5 NC_005091.1 + 51017 0.66 0.377814
Target:  5'- cGCUUGCGgUCGCuGaCGCggcaaACGGCGGGu -3'
miRNA:   3'- cCGAGCGCgGGCG-C-GCGa----UGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 4655 0.66 0.377814
Target:  5'- aGCaUCGCGCagcuCCGCGCGUcguuUugGGcCGGGg -3'
miRNA:   3'- cCG-AGCGCG----GGCGCGCG----AugUC-GCCU- -5'
22647 5' -62.5 NC_005091.1 + 41050 0.66 0.361307
Target:  5'- aGGCgcgcaGCGCaCGCaGCGCUG-GGCGGGa -3'
miRNA:   3'- -CCGag---CGCGgGCG-CGCGAUgUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 49480 0.66 0.361307
Target:  5'- uGCUaagaGUGCCgCGCGUGUU-CAGCGcGAg -3'
miRNA:   3'- cCGAg---CGCGG-GCGCGCGAuGUCGC-CU- -5'
22647 5' -62.5 NC_005091.1 + 14928 0.66 0.356454
Target:  5'- cGCUCcCGCCUGUcauggGCGCauccggugguucgcaUGCGGCGGGu -3'
miRNA:   3'- cCGAGcGCGGGCG-----CGCG---------------AUGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 15048 0.66 0.356454
Target:  5'- cGCUCcCGCCUGUcauggGCGCauccggugguucgcaUGCGGCGGGu -3'
miRNA:   3'- cCGAGcGCGGGCG-----CGCG---------------AUGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 15168 0.66 0.356454
Target:  5'- cGCUCcCGCCUGUcauggGCGCauccggugguucgcaUGCGGCGGGu -3'
miRNA:   3'- cCGAGcGCGGGCG-----CGCG---------------AUGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 51588 0.67 0.348469
Target:  5'- cGGCUCGCgaugcgauagaacugGCCCGUgcaugcgauccGCGCgGCaucgccaagugGGCGGAa -3'
miRNA:   3'- -CCGAGCG---------------CGGGCG-----------CGCGaUG-----------UCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 50811 0.67 0.34531
Target:  5'- cGGCcgUCGUGCgCGCG-GCUAUccggAGCGGu -3'
miRNA:   3'- -CCG--AGCGCGgGCGCgCGAUG----UCGCCu -5'
22647 5' -62.5 NC_005091.1 + 16302 0.67 0.34531
Target:  5'- cGGcCUCGUcccuGaUCCGgGCGCgACGGCGGGc -3'
miRNA:   3'- -CC-GAGCG----C-GGGCgCGCGaUGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 47049 0.67 0.34531
Target:  5'- uGC-CGCGCUCGCG-GU--CAGCGGGg -3'
miRNA:   3'- cCGaGCGCGGGCGCgCGauGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 55317 0.67 0.337504
Target:  5'- aGCuUUGcCGCCCGCGUGCUcgcGCucgaAGUGGGc -3'
miRNA:   3'- cCG-AGC-GCGGGCGCGCGA---UG----UCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 35081 0.67 0.337504
Target:  5'- cGGUgacUGCgGCCCGUGCG--GCGGCGGu -3'
miRNA:   3'- -CCGa--GCG-CGGGCGCGCgaUGUCGCCu -5'
22647 5' -62.5 NC_005091.1 + 40646 0.67 0.332882
Target:  5'- cGGC-CGUGCUCG-GCGCgggauaccgacucgGCGGCGGc -3'
miRNA:   3'- -CCGaGCGCGGGCgCGCGa-------------UGUCGCCu -5'
22647 5' -62.5 NC_005091.1 + 23319 0.67 0.329827
Target:  5'- uGGUUUGCGaaCGCgccGCGCUaccACAGCGGc -3'
miRNA:   3'- -CCGAGCGCggGCG---CGCGA---UGUCGCCu -5'
22647 5' -62.5 NC_005091.1 + 33568 0.67 0.323029
Target:  5'- cGGCcucucgaccuaugagCGCGaaaUCGCGCGCcuCGGCGGAg -3'
miRNA:   3'- -CCGa--------------GCGCg--GGCGCGCGauGUCGCCU- -5'
22647 5' -62.5 NC_005091.1 + 1001 0.67 0.314863
Target:  5'- uGCUCGaCGCggGCGCGCUGCucGGCGu- -3'
miRNA:   3'- cCGAGC-GCGggCGCGCGAUG--UCGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.