miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 3' -54 NC_005091.1 + 41036 0.68 0.644
Target:  5'- -cGCAgcGCUGGGCGgGACGCGg--- -3'
miRNA:   3'- cuCGUaaCGGCUCGCgUUGCGCaugg -5'
22648 3' -54 NC_005091.1 + 54210 0.69 0.632892
Target:  5'- aGGCAUugaUGCCGcgcuaugugcaAGCGCAauugcacgGCGCG-ACCg -3'
miRNA:   3'- cUCGUA---ACGGC-----------UCGCGU--------UGCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 23225 0.69 0.631781
Target:  5'- --aCcgUGCCGcugugguAGCGCGGCGCGUucgcaaACCa -3'
miRNA:   3'- cucGuaACGGC-------UCGCGUUGCGCA------UGG- -5'
22648 3' -54 NC_005091.1 + 7216 0.69 0.621783
Target:  5'- gGGGCGUccucgGCCG-GCagaugGCGGCGCGUuACCu -3'
miRNA:   3'- -CUCGUAa----CGGCuCG-----CGUUGCGCA-UGG- -5'
22648 3' -54 NC_005091.1 + 14233 0.69 0.621783
Target:  5'- cGGGCAcgGUCGAGcCGCcuuGCGUGUcguacGCCg -3'
miRNA:   3'- -CUCGUaaCGGCUC-GCGu--UGCGCA-----UGG- -5'
22648 3' -54 NC_005091.1 + 31132 0.69 0.621783
Target:  5'- aAGCGUUcCCGA-UGCAACGCGUggacuucgGCCg -3'
miRNA:   3'- cUCGUAAcGGCUcGCGUUGCGCA--------UGG- -5'
22648 3' -54 NC_005091.1 + 22846 0.69 0.621783
Target:  5'- -----aUGCCGAGCGC-ACGCGccugaacGCCg -3'
miRNA:   3'- cucguaACGGCUCGCGuUGCGCa------UGG- -5'
22648 3' -54 NC_005091.1 + 26879 0.69 0.620672
Target:  5'- aGGCGcUGCUGAuGCGCucgaucaggcgaaGACGCGaGCCg -3'
miRNA:   3'- cUCGUaACGGCU-CGCG-------------UUGCGCaUGG- -5'
22648 3' -54 NC_005091.1 + 10145 0.69 0.618451
Target:  5'- cGGCAcgcGCCGAGCGCcGcacguuccugauguGCGCGUGuCCu -3'
miRNA:   3'- cUCGUaa-CGGCUCGCG-U--------------UGCGCAU-GG- -5'
22648 3' -54 NC_005091.1 + 48972 0.69 0.617341
Target:  5'- gGGGC-UUGgCGGGCGCGcuaaaugucccguUGCGUACCu -3'
miRNA:   3'- -CUCGuAACgGCUCGCGUu------------GCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 23384 0.69 0.610683
Target:  5'- gGGGCA--GCCGA-CGCAGCGCc-GCCg -3'
miRNA:   3'- -CUCGUaaCGGCUcGCGUUGCGcaUGG- -5'
22648 3' -54 NC_005091.1 + 38229 0.69 0.599602
Target:  5'- cGGCAggGCC-AGCGCcauguaguGCGCGUccACCa -3'
miRNA:   3'- cUCGUaaCGGcUCGCGu-------UGCGCA--UGG- -5'
22648 3' -54 NC_005091.1 + 26788 0.69 0.588549
Target:  5'- aAGCGguccGUCGAGgGCGcggccauCGCGUACCa -3'
miRNA:   3'- cUCGUaa--CGGCUCgCGUu------GCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 19783 0.7 0.55565
Target:  5'- -cGCAgcGCCcauGAGCGUGAUGCGauUGCCg -3'
miRNA:   3'- cuCGUaaCGG---CUCGCGUUGCGC--AUGG- -5'
22648 3' -54 NC_005091.1 + 16285 0.7 0.544797
Target:  5'- cGGGCGcgacGgCGGGCGCGACGaaGUACCu -3'
miRNA:   3'- -CUCGUaa--CgGCUCGCGUUGCg-CAUGG- -5'
22648 3' -54 NC_005091.1 + 9093 0.7 0.534013
Target:  5'- cGGCGUcgUGCUGaAGCGCAACcccgaUGUGCCg -3'
miRNA:   3'- cUCGUA--ACGGC-UCGCGUUGc----GCAUGG- -5'
22648 3' -54 NC_005091.1 + 40747 0.71 0.491711
Target:  5'- -cGUGUuccgUGaaGGGCGCuGCGCGUACCg -3'
miRNA:   3'- cuCGUA----ACggCUCGCGuUGCGCAUGG- -5'
22648 3' -54 NC_005091.1 + 25876 0.71 0.481375
Target:  5'- aGGCA--GCCG-GCGCAACGaCGaACCa -3'
miRNA:   3'- cUCGUaaCGGCuCGCGUUGC-GCaUGG- -5'
22648 3' -54 NC_005091.1 + 31786 0.71 0.481375
Target:  5'- cGAGCAggccGCCGAcgaGCGCGACGacacgGUACUu -3'
miRNA:   3'- -CUCGUaa--CGGCU---CGCGUUGCg----CAUGG- -5'
22648 3' -54 NC_005091.1 + 35246 0.72 0.416037
Target:  5'- -uGCAaccUGCCGgcaguaccucgcggcGGCGCcgcGACGCGUACCa -3'
miRNA:   3'- cuCGUa--ACGGC---------------UCGCG---UUGCGCAUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.