miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 5' -47.5 NC_005091.1 + 5264 0.66 0.990581
Target:  5'- -cGUUGCggUGCGUGCaagGGAACCGGAa- -3'
miRNA:   3'- caUAAUG--AUGCGCGg--CUUUGGCUUgu -5'
22648 5' -47.5 NC_005091.1 + 23585 0.66 0.990581
Target:  5'- aUcgUGCUGucgauccccUGCG-CGAAACCGGACGu -3'
miRNA:   3'- cAuaAUGAU---------GCGCgGCUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 55332 0.66 0.989114
Target:  5'- ---gUGCU-CGCGCucgaagugggCGAGACCGAAUc -3'
miRNA:   3'- cauaAUGAuGCGCG----------GCUUUGGCUUGu -5'
22648 5' -47.5 NC_005091.1 + 356 0.66 0.985651
Target:  5'- uUGUU-CUGCGCGCCaaauACCGAu-- -3'
miRNA:   3'- cAUAAuGAUGCGCGGcuu-UGGCUugu -5'
22648 5' -47.5 NC_005091.1 + 57750 0.66 0.985651
Target:  5'- uUGUU-CUGCGCGCCaaauACCGAu-- -3'
miRNA:   3'- cAUAAuGAUGCGCGGcuu-UGGCUugu -5'
22648 5' -47.5 NC_005091.1 + 57318 0.66 0.983632
Target:  5'- ----aGCUGCGCGUCaaGAAGCaauCGAACGg -3'
miRNA:   3'- cauaaUGAUGCGCGG--CUUUG---GCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 46253 0.67 0.981404
Target:  5'- ---cUACgACGCGaaGGAGCUGGACGc -3'
miRNA:   3'- cauaAUGaUGCGCggCUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 4291 0.67 0.981404
Target:  5'- ----gACggGCGCGCC---GCCGGGCAa -3'
miRNA:   3'- cauaaUGa-UGCGCGGcuuUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 58025 0.67 0.976278
Target:  5'- ----cGCUcauCGCGCUGAacgcggagaaucGACCGGGCAu -3'
miRNA:   3'- cauaaUGAu--GCGCGGCU------------UUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 632 0.67 0.976278
Target:  5'- ----cGCUcauCGCGCUGAacgcggagaaucGACCGGGCAu -3'
miRNA:   3'- cauaaUGAu--GCGCGGCU------------UUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 20933 0.67 0.973359
Target:  5'- ----gACUGC-CGUCGAAGgCGGACAu -3'
miRNA:   3'- cauaaUGAUGcGCGGCUUUgGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 55073 0.67 0.973359
Target:  5'- ---aUACcgGCGgGCCGcccGGCCGGACGa -3'
miRNA:   3'- cauaAUGa-UGCgCGGCu--UUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 6871 0.67 0.973359
Target:  5'- ----aGCUGCGCGUCGGucAUCGGAUu -3'
miRNA:   3'- cauaaUGAUGCGCGGCUu-UGGCUUGu -5'
22648 5' -47.5 NC_005091.1 + 22224 0.67 0.973359
Target:  5'- ---cUGCUGCGCGUa-GAGCUGGAUAc -3'
miRNA:   3'- cauaAUGAUGCGCGgcUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 49053 0.67 0.973359
Target:  5'- ---cUGCUGCGCaCCGuGugCGGGCGg -3'
miRNA:   3'- cauaAUGAUGCGcGGCuUugGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 16029 0.68 0.970187
Target:  5'- cGUcgUGCUGC-CGCCG--GCCGGcgGCAc -3'
miRNA:   3'- -CAuaAUGAUGcGCGGCuuUGGCU--UGU- -5'
22648 5' -47.5 NC_005091.1 + 39409 0.68 0.966035
Target:  5'- ----cGCUGCGUGUCGcuacgcagacuuGGCCGAACGa -3'
miRNA:   3'- cauaaUGAUGCGCGGCu-----------UUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 34361 0.68 0.959069
Target:  5'- uGUcgUACUGCacgccGCGUCGAAGCgUGGGCGu -3'
miRNA:   3'- -CAuaAUGAUG-----CGCGGCUUUG-GCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 13497 0.68 0.959069
Target:  5'- ----cGgUGCGcCGCCGAGACCGuuCAc -3'
miRNA:   3'- cauaaUgAUGC-GCGGCUUUGGCuuGU- -5'
22648 5' -47.5 NC_005091.1 + 30631 0.69 0.950243
Target:  5'- ----cACUGCGUGCCuugGAGACcCGGACc -3'
miRNA:   3'- cauaaUGAUGCGCGG---CUUUG-GCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.