miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22648 5' -47.5 NC_005091.1 + 53717 0.97 0.04169
Target:  5'- aGUAUUACcAUGCGCCGAAACCGAACAg -3'
miRNA:   3'- -CAUAAUGaUGCGCGGCUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 33352 0.74 0.722296
Target:  5'- -gGUUGCUGCgucGCGuCCGucGCCGAGCGa -3'
miRNA:   3'- caUAAUGAUG---CGC-GGCuuUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 23395 0.74 0.755431
Target:  5'- ----cGCaGCGcCGCCGAacaGACCGAGCAg -3'
miRNA:   3'- cauaaUGaUGC-GCGGCU---UUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 12690 0.74 0.755431
Target:  5'- -aAUUACgUugGCGacauCCGAGACCGGGCGc -3'
miRNA:   3'- caUAAUG-AugCGC----GGCUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 10614 0.72 0.817578
Target:  5'- ---gUACUGCG-GCCGGAACC-AACAg -3'
miRNA:   3'- cauaAUGAUGCgCGGCUUUGGcUUGU- -5'
22648 5' -47.5 NC_005091.1 + 19539 0.72 0.827251
Target:  5'- -gGUUGCUGCGCuuucggGCCGAGcGCCGccGACAg -3'
miRNA:   3'- caUAAUGAUGCG------CGGCUU-UGGC--UUGU- -5'
22648 5' -47.5 NC_005091.1 + 40981 0.72 0.836696
Target:  5'- ----cGCUGCGCGCCu---CCGAACu -3'
miRNA:   3'- cauaaUGAUGCGCGGcuuuGGCUUGu -5'
22648 5' -47.5 NC_005091.1 + 43778 0.72 0.85486
Target:  5'- aGUcgUACUcguagaGCGCGCCGAGcGCauaGAGCAu -3'
miRNA:   3'- -CAuaAUGA------UGCGCGGCUU-UGg--CUUGU- -5'
22648 5' -47.5 NC_005091.1 + 17157 0.71 0.871989
Target:  5'- ----cACUuCGCGCCGAggUCGAgaGCAc -3'
miRNA:   3'- cauaaUGAuGCGCGGCUuuGGCU--UGU- -5'
22648 5' -47.5 NC_005091.1 + 4900 0.71 0.871989
Target:  5'- -cGUUGCcgcCGCGCCGA-GCgCGAACAg -3'
miRNA:   3'- caUAAUGau-GCGCGGCUuUG-GCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 10137 0.71 0.871989
Target:  5'- -cGUUACgccggcACGCGCCGAGcGCCGcACGu -3'
miRNA:   3'- caUAAUGa-----UGCGCGGCUU-UGGCuUGU- -5'
22648 5' -47.5 NC_005091.1 + 34711 0.71 0.888015
Target:  5'- ---aUGCUGuCGCGCUGAuAGCCGAccGCGc -3'
miRNA:   3'- cauaAUGAU-GCGCGGCU-UUGGCU--UGU- -5'
22648 5' -47.5 NC_005091.1 + 54318 0.7 0.916556
Target:  5'- cGUcgUGCUACGgauCGCaguauuuGAAGCCGGACGa -3'
miRNA:   3'- -CAuaAUGAUGC---GCGg------CUUUGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 46128 0.7 0.916556
Target:  5'- ---cUGCU-CGUGCCGGAcGCCGAugAu -3'
miRNA:   3'- cauaAUGAuGCGCGGCUU-UGGCUugU- -5'
22648 5' -47.5 NC_005091.1 + 1386 0.69 0.934773
Target:  5'- cGUGUUcCUccuguuCGCGCCGAugggcggcauGCCGAGCGc -3'
miRNA:   3'- -CAUAAuGAu-----GCGCGGCUu---------UGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 279 0.69 0.940233
Target:  5'- gGUAUUug-GCGCGCaGAAcaaGCCGGGCAu -3'
miRNA:   3'- -CAUAAugaUGCGCGgCUU---UGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 57673 0.69 0.940233
Target:  5'- gGUAUUug-GCGCGCaGAAcaaGCCGGGCAu -3'
miRNA:   3'- -CAUAAugaUGCGCGgCUU---UGGCUUGU- -5'
22648 5' -47.5 NC_005091.1 + 35687 0.69 0.945389
Target:  5'- ---cUGCUGCGCGCgGAGacguACCGGu-- -3'
miRNA:   3'- cauaAUGAUGCGCGgCUU----UGGCUugu -5'
22648 5' -47.5 NC_005091.1 + 12084 0.69 0.945389
Target:  5'- -gGUUGCgUACGCGC--GAGCCGGGCc -3'
miRNA:   3'- caUAAUG-AUGCGCGgcUUUGGCUUGu -5'
22648 5' -47.5 NC_005091.1 + 30631 0.69 0.950243
Target:  5'- ----cACUGCGUGCCuugGAGACcCGGACc -3'
miRNA:   3'- cauaaUGAUGCGCGG---CUUUG-GCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.