Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22648 | 5' | -47.5 | NC_005091.1 | + | 46253 | 0.67 | 0.981404 |
Target: 5'- ---cUACgACGCGaaGGAGCUGGACGc -3' miRNA: 3'- cauaAUGaUGCGCggCUUUGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 30631 | 0.69 | 0.950243 |
Target: 5'- ----cACUGCGUGCCuugGAGACcCGGACc -3' miRNA: 3'- cauaaUGAUGCGCGG---CUUUG-GCUUGu -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 34361 | 0.68 | 0.959069 |
Target: 5'- uGUcgUACUGCacgccGCGUCGAAGCgUGGGCGu -3' miRNA: 3'- -CAuaAUGAUG-----CGCGGCUUUG-GCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 13497 | 0.68 | 0.959069 |
Target: 5'- ----cGgUGCGcCGCCGAGACCGuuCAc -3' miRNA: 3'- cauaaUgAUGC-GCGGCUUUGGCuuGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 16029 | 0.68 | 0.970187 |
Target: 5'- cGUcgUGCUGC-CGCCG--GCCGGcgGCAc -3' miRNA: 3'- -CAuaAUGAUGcGCGGCuuUGGCU--UGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 49053 | 0.67 | 0.973359 |
Target: 5'- ---cUGCUGCGCaCCGuGugCGGGCGg -3' miRNA: 3'- cauaAUGAUGCGcGGCuUugGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 22224 | 0.67 | 0.973359 |
Target: 5'- ---cUGCUGCGCGUa-GAGCUGGAUAc -3' miRNA: 3'- cauaAUGAUGCGCGgcUUUGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 632 | 0.67 | 0.976278 |
Target: 5'- ----cGCUcauCGCGCUGAacgcggagaaucGACCGGGCAu -3' miRNA: 3'- cauaaUGAu--GCGCGGCU------------UUGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 58025 | 0.67 | 0.976278 |
Target: 5'- ----cGCUcauCGCGCUGAacgcggagaaucGACCGGGCAu -3' miRNA: 3'- cauaaUGAu--GCGCGGCU------------UUGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 12084 | 0.69 | 0.945389 |
Target: 5'- -gGUUGCgUACGCGC--GAGCCGGGCc -3' miRNA: 3'- caUAAUG-AUGCGCGgcUUUGGCUUGu -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 57673 | 0.69 | 0.940233 |
Target: 5'- gGUAUUug-GCGCGCaGAAcaaGCCGGGCAu -3' miRNA: 3'- -CAUAAugaUGCGCGgCUU---UGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 279 | 0.69 | 0.940233 |
Target: 5'- gGUAUUug-GCGCGCaGAAcaaGCCGGGCAu -3' miRNA: 3'- -CAUAAugaUGCGCGgCUU---UGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 23395 | 0.74 | 0.755431 |
Target: 5'- ----cGCaGCGcCGCCGAacaGACCGAGCAg -3' miRNA: 3'- cauaaUGaUGC-GCGGCU---UUGGCUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 19539 | 0.72 | 0.827251 |
Target: 5'- -gGUUGCUGCGCuuucggGCCGAGcGCCGccGACAg -3' miRNA: 3'- caUAAUGAUGCG------CGGCUU-UGGC--UUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 40981 | 0.72 | 0.836696 |
Target: 5'- ----cGCUGCGCGCCu---CCGAACu -3' miRNA: 3'- cauaaUGAUGCGCGGcuuuGGCUUGu -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 43778 | 0.72 | 0.85486 |
Target: 5'- aGUcgUACUcguagaGCGCGCCGAGcGCauaGAGCAu -3' miRNA: 3'- -CAuaAUGA------UGCGCGGCUU-UGg--CUUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 10137 | 0.71 | 0.871989 |
Target: 5'- -cGUUACgccggcACGCGCCGAGcGCCGcACGu -3' miRNA: 3'- caUAAUGa-----UGCGCGGCUU-UGGCuUGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 34711 | 0.71 | 0.888015 |
Target: 5'- ---aUGCUGuCGCGCUGAuAGCCGAccGCGc -3' miRNA: 3'- cauaAUGAU-GCGCGGCU-UUGGCU--UGU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 46128 | 0.7 | 0.916556 |
Target: 5'- ---cUGCU-CGUGCCGGAcGCCGAugAu -3' miRNA: 3'- cauaAUGAuGCGCGGCUU-UGGCUugU- -5' |
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22648 | 5' | -47.5 | NC_005091.1 | + | 1386 | 0.69 | 0.934773 |
Target: 5'- cGUGUUcCUccuguuCGCGCCGAugggcggcauGCCGAGCGc -3' miRNA: 3'- -CAUAAuGAu-----GCGCGGCUu---------UGGCUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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