miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2265 3' -59.4 NC_001405.1 + 16453 0.66 0.355928
Target:  5'- gCAGGCCGCuaaccgaGUCGcGCACcCAGUACa- -3'
miRNA:   3'- -GUCCGGCG-------CAGUaCGUGcGUCGUGga -5'
2265 3' -59.4 NC_001405.1 + 6575 0.66 0.347387
Target:  5'- gCAGGCgCGCGUCGaaguagucuaucuUGCAuccuUGCaagucuAGCGCCUg -3'
miRNA:   3'- -GUCCG-GCGCAGU-------------ACGU----GCG------UCGUGGA- -5'
2265 3' -59.4 NC_001405.1 + 17116 0.67 0.315491
Target:  5'- gAGGuCCGCGugcggccaaUCAaGCAgGUGGCACCg -3'
miRNA:   3'- gUCC-GGCGC---------AGUaCGUgCGUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 5266 0.67 0.315491
Target:  5'- aCGGGCCaGgGUCAUGUcuuuccacggGCGCAGgGuCCUc -3'
miRNA:   3'- -GUCCGG-CgCAGUACG----------UGCGUCgU-GGA- -5'
2265 3' -59.4 NC_001405.1 + 12194 0.67 0.30306
Target:  5'- cCAGGgCGCGUCGgcuuggggcccagcGCAgGuCAGCGCCc -3'
miRNA:   3'- -GUCCgGCGCAGUa-------------CGUgC-GUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 17654 0.67 0.300011
Target:  5'- gGGGUgguagCGCG-C-UGUugGCAGCACCa -3'
miRNA:   3'- gUCCG-----GCGCaGuACGugCGUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 17322 0.68 0.277904
Target:  5'- -cGGCCGCc---UGCAcCGCGGCAUCUg -3'
miRNA:   3'- guCCGGCGcaguACGU-GCGUCGUGGA- -5'
2265 3' -59.4 NC_001405.1 + 28527 0.68 0.277904
Target:  5'- uCAGGCUGUaggUGUGgGCGCAGCaACCg -3'
miRNA:   3'- -GUCCGGCGca-GUACgUGCGUCG-UGGa -5'
2265 3' -59.4 NC_001405.1 + 25088 0.68 0.277904
Target:  5'- gCAGGCucgCGCGUCucaagccaGCGCGCcAGCugCUc -3'
miRNA:   3'- -GUCCG---GCGCAGua------CGUGCG-UCGugGA- -5'
2265 3' -59.4 NC_001405.1 + 18688 0.68 0.2639
Target:  5'- aCGGGCCGCaUCGaucgcggaccGCugGCGGCACg- -3'
miRNA:   3'- -GUCCGGCGcAGUa---------CGugCGUCGUGga -5'
2265 3' -59.4 NC_001405.1 + 11094 0.69 0.207882
Target:  5'- gGGGgCGCaUC-UGC-CGCAGCACCg -3'
miRNA:   3'- gUCCgGCGcAGuACGuGCGUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 8790 0.7 0.202335
Target:  5'- cCGGGCC-CGUCGUcuuCACGCAgagGCGCCa -3'
miRNA:   3'- -GUCCGGcGCAGUAc--GUGCGU---CGUGGa -5'
2265 3' -59.4 NC_001405.1 + 22722 0.7 0.176495
Target:  5'- uCAGcGCCGgGUgGUGCACGCuggccAGCACgCUc -3'
miRNA:   3'- -GUC-CGGCgCAgUACGUGCG-----UCGUG-GA- -5'
2265 3' -59.4 NC_001405.1 + 17746 0.7 0.176495
Target:  5'- aCGGGCggcaUGCGUCGUGCGCaccaccggcgGCGGCGCg- -3'
miRNA:   3'- -GUCCG----GCGCAGUACGUG----------CGUCGUGga -5'
2265 3' -59.4 NC_001405.1 + 16043 0.72 0.145263
Target:  5'- -cGGCCGCGuUUGUGCGCGCcccagGGCGCg- -3'
miRNA:   3'- guCCGGCGC-AGUACGUGCG-----UCGUGga -5'
2265 3' -59.4 NC_001405.1 + 8743 0.72 0.142834
Target:  5'- --cGCCGCGUCgucgcGUucgccagcaaccuccGCGCGCAGCACCa -3'
miRNA:   3'- gucCGGCGCAG-----UA---------------CGUGCGUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 17043 0.72 0.141236
Target:  5'- uUAGGCCGCGcUUuucuucggacgGUGCAagcguggGCAGCACCUg -3'
miRNA:   3'- -GUCCGGCGC-AG-----------UACGUg------CGUCGUGGA- -5'
2265 3' -59.4 NC_001405.1 + 12662 0.72 0.133487
Target:  5'- gAGGCCGUGgcgCAgcgugagcGCGCGCAGCAgCa -3'
miRNA:   3'- gUCCGGCGCa--GUa-------CGUGCGUCGUgGa -5'
2265 3' -59.4 NC_001405.1 + 23838 0.78 0.046825
Target:  5'- -uGGCCGCGggcuggGUGUGCGCGGCACCa -3'
miRNA:   3'- guCCGGCGCag----UACGUGCGUCGUGGa -5'
2265 3' -59.4 NC_001405.1 + 23022 1.07 0.000273
Target:  5'- aCAGGCCGCGUCAUGCACGCAGCACCUu -3'
miRNA:   3'- -GUCCGGCGCAGUACGUGCGUCGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.