Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2265 | 5' | -53 | NC_001405.1 | + | 15263 | 0.66 | 0.700216 |
Target: 5'- cGGGGGcggcagcuUCUGcCGCUGCc--UCGGCCUCa -3' miRNA: 3'- -CCUCU--------AGAC-GUGGUGuaaAGCCGGGG- -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 4083 | 0.68 | 0.631784 |
Target: 5'- aGGGGuUUUGCGCgCGCGgua-GGCCCg -3' miRNA: 3'- -CCUCuAGACGUG-GUGUaaagCCGGGg -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 5569 | 0.72 | 0.38496 |
Target: 5'- cGGGGAguaggcaUCcGCGCCGCA----GGCCCCg -3' miRNA: 3'- -CCUCU-------AGaCGUGGUGUaaagCCGGGG- -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 3404 | 0.72 | 0.376629 |
Target: 5'- -aGGGUCUGCACCugGUgcgGGUCUCa -3' miRNA: 3'- ccUCUAGACGUGGugUAaagCCGGGG- -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 6541 | 0.73 | 0.332602 |
Target: 5'- gGGGGGUCUGCGuCCACGguaaaGaCCCCg -3' miRNA: 3'- -CCUCUAGACGU-GGUGUaaag-CcGGGG- -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 3961 | 0.75 | 0.26317 |
Target: 5'- -uGGAUCUGCGCCAgCAggUUUCuGCCCUg -3' miRNA: 3'- ccUCUAGACGUGGU-GU--AAAGcCGGGG- -5' |
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2265 | 5' | -53 | NC_001405.1 | + | 23060 | 1.15 | 0.000385 |
Target: 5'- uGGAGAUCUGCACCACAUUUCGGCCCCa -3' miRNA: 3'- -CCUCUAGACGUGGUGUAAAGCCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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