miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22650 3' -61.1 NC_005091.1 + 26146 0.66 0.455095
Target:  5'- cGCUGUCgugGUAUcAGCGCGUGcGCgGCg -3'
miRNA:   3'- -CGGCGGa--CGUGcUCGCGCACcUGgCG- -5'
22650 3' -61.1 NC_005091.1 + 25185 0.66 0.445714
Target:  5'- gGCCGCUUGUGUGAGC---UGGAUCGUg -3'
miRNA:   3'- -CGGCGGACGUGCUCGcgcACCUGGCG- -5'
22650 3' -61.1 NC_005091.1 + 48844 0.66 0.445714
Target:  5'- uGCgGCCUaGCugGAuCGUGUGGAuUCGg -3'
miRNA:   3'- -CGgCGGA-CGugCUcGCGCACCU-GGCg -5'
22650 3' -61.1 NC_005091.1 + 53164 0.66 0.436443
Target:  5'- uCCGCUguagcGCGCGGGCGCGagccuuccGGugcauCCGCc -3'
miRNA:   3'- cGGCGGa----CGUGCUCGCGCa-------CCu----GGCG- -5'
22650 3' -61.1 NC_005091.1 + 11904 0.66 0.436443
Target:  5'- gGuuGUgCUGCACGuuccccuGCGCGUcGGAUCGa -3'
miRNA:   3'- -CggCG-GACGUGCu------CGCGCA-CCUGGCg -5'
22650 3' -61.1 NC_005091.1 + 25484 0.66 0.436443
Target:  5'- aUCGCCgauauggGCuucGCGGaCGCGUGGACCa- -3'
miRNA:   3'- cGGCGGa------CG---UGCUcGCGCACCUGGcg -5'
22650 3' -61.1 NC_005091.1 + 56000 0.66 0.427284
Target:  5'- cGCCGCCUGCGCacgcaguuggucGGccugcuGCGCcaucGUGcGACCGg -3'
miRNA:   3'- -CGGCGGACGUG------------CU------CGCG----CAC-CUGGCg -5'
22650 3' -61.1 NC_005091.1 + 15238 0.66 0.427284
Target:  5'- aGCCGUcccgCUGC-CGccGCGCGUGuACCGUu -3'
miRNA:   3'- -CGGCG----GACGuGCu-CGCGCACcUGGCG- -5'
22650 3' -61.1 NC_005091.1 + 724 0.66 0.418239
Target:  5'- uGCUGCgUGagguCGAGCGCcaGUGGAaggaaUCGCa -3'
miRNA:   3'- -CGGCGgACgu--GCUCGCG--CACCU-----GGCG- -5'
22650 3' -61.1 NC_005091.1 + 16623 0.67 0.410199
Target:  5'- cGCCGCCUGCcaagccguGCcauuccacucuacgcGGCcCGUGGAgCCGCu -3'
miRNA:   3'- -CGGCGGACG--------UGc--------------UCGcGCACCU-GGCG- -5'
22650 3' -61.1 NC_005091.1 + 9293 0.67 0.409312
Target:  5'- gGCCGCCgaccgGCugGccGUGCGaaUGGuucCCGCc -3'
miRNA:   3'- -CGGCGGa----CGugCu-CGCGC--ACCu--GGCG- -5'
22650 3' -61.1 NC_005091.1 + 41740 0.67 0.39963
Target:  5'- cGCCGUauaaaaacuggcgCUGCACGAugGCGCGUGcGuACaUGCu -3'
miRNA:   3'- -CGGCG-------------GACGUGCU--CGCGCAC-C-UG-GCG- -5'
22650 3' -61.1 NC_005091.1 + 31327 0.67 0.391819
Target:  5'- cGCgGCCUuGCACGuucGGCGCGacgaacgGGGCgaGCu -3'
miRNA:   3'- -CGgCGGA-CGUGC---UCGCGCa------CCUGg-CG- -5'
22650 3' -61.1 NC_005091.1 + 51623 0.67 0.391819
Target:  5'- gGCCGCguaucagauaCUGCGCGGGgGCGguucuacGGcUCGCg -3'
miRNA:   3'- -CGGCG----------GACGUGCUCgCGCa------CCuGGCG- -5'
22650 3' -61.1 NC_005091.1 + 16066 0.67 0.386667
Target:  5'- aGCCGUC-GCAUcgcaGAGCgacaagcaggucaucGCGUGGaacGCCGCg -3'
miRNA:   3'- -CGGCGGaCGUG----CUCG---------------CGCACC---UGGCG- -5'
22650 3' -61.1 NC_005091.1 + 34436 0.67 0.383257
Target:  5'- cGCgGCgUGCaguACGAcaaGCGCGgccGGCCGCa -3'
miRNA:   3'- -CGgCGgACG---UGCU---CGCGCac-CUGGCG- -5'
22650 3' -61.1 NC_005091.1 + 509 0.67 0.37482
Target:  5'- uGCuCGaCCUGCGcCGucgcGUGCGUGaGaACCGCg -3'
miRNA:   3'- -CG-GC-GGACGU-GCu---CGCGCAC-C-UGGCG- -5'
22650 3' -61.1 NC_005091.1 + 57903 0.67 0.37482
Target:  5'- uGCuCGaCCUGCGcCGucgcGUGCGUGaGaACCGCg -3'
miRNA:   3'- -CG-GC-GGACGU-GCu---CGCGCAC-C-UGGCG- -5'
22650 3' -61.1 NC_005091.1 + 10893 0.67 0.36651
Target:  5'- cGCUGCCgagUGCAau-GCGCGccuUGG-CCGCg -3'
miRNA:   3'- -CGGCGG---ACGUgcuCGCGC---ACCuGGCG- -5'
22650 3' -61.1 NC_005091.1 + 26420 0.68 0.358328
Target:  5'- gGCUGCCaucguagcgGC-CGGGCGCGagcaGGCCGCc -3'
miRNA:   3'- -CGGCGGa--------CGuGCUCGCGCac--CUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.