Results 1 - 8 of 8 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22650 | 5' | -56 | NC_005091.1 | + | 17302 | 0.66 | 0.718359 |
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Target: 5'- aGaCGUgagCGUCGGGCCggaaaCCgGCGUGAc -3' miRNA: 3'- gCcGCAa--GUAGUCCGGaa---GG-CGCACU- -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 46825 | 0.66 | 0.696005 |
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Target: 5'- uCGGCGgUCGUguccgggacgaCGcGGCCUUCCaacacguccugugGCGUGAg -3' miRNA: 3'- -GCCGCaAGUA-----------GU-CCGGAAGG-------------CGCACU- -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 26505 | 0.66 | 0.675548 |
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Target: 5'- uCGGCcauggacUUCGUCAGGCUggCCGUGcGGg -3' miRNA: 3'- -GCCGc------AAGUAGUCCGGaaGGCGCaCU- -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 18935 | 0.66 | 0.675548 |
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Target: 5'- aCGGUGUUUuUCGacGGCCUcaUCUGCGcGAu -3' miRNA: 3'- -GCCGCAAGuAGU--CCGGA--AGGCGCaCU- -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 52795 | 0.67 | 0.610322 |
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Target: 5'- gCGGCGgcgAUCAGGCCgcaCGCGg-- -3' miRNA: 3'- -GCCGCaagUAGUCCGGaagGCGCacu -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 5411 | 0.67 | 0.610322 |
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Target: 5'- aGGCGUUCAauucguUCAGGCgUUCgGCc--- -3' miRNA: 3'- gCCGCAAGU------AGUCCGgAAGgCGcacu -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 11708 | 0.68 | 0.598376 |
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Target: 5'- aGGUGUUgaaggcaCGUCAGGUCUUgCGCGa-- -3' miRNA: 3'- gCCGCAA-------GUAGUCCGGAAgGCGCacu -5' |
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| 22650 | 5' | -56 | NC_005091.1 | + | 55629 | 1.09 | 0.000924 |
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Target: 5'- aCGGCGUUCAUCAGGCCUUCCGCGUGAc -3' miRNA: 3'- -GCCGCAAGUAGUCCGGAAGGCGCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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