Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 7787 | 0.66 | 0.99967 |
|
Target: 5'- --cGUCACGAUGaAUUGG--UCGCUg- -3' miRNA: 3'- caaCAGUGCUAU-UAGCCaaAGUGAaa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 13773 | 0.67 | 0.999115 |
|
Target: 5'- --cGUCACG-UGGUCGGUcggCACg-- -3' miRNA: 3'- caaCAGUGCuAUUAGCCAaa-GUGaaa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 14550 | 0.69 | 0.996248 |
|
Target: 5'- -cUGUCACGAUcgcuacggCGGggUCGCUg- -3' miRNA: 3'- caACAGUGCUAuua-----GCCaaAGUGAaa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 31859 | 0.7 | 0.991256 |
|
Target: 5'- --cGUCACGAU-AUCGGcUUCGCc-- -3' miRNA: 3'- caaCAGUGCUAuUAGCCaAAGUGaaa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 14291 | 0.73 | 0.959043 |
|
Target: 5'- --cGUCACGAUGcguAUCGGcUUCGCg-- -3' miRNA: 3'- caaCAGUGCUAU---UAGCCaAAGUGaaa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 1578 | 0.73 | 0.944719 |
|
Target: 5'- cUUGUCaACGAUAAUCGGUcggaagUUACUUc -3' miRNA: 3'- cAACAG-UGCUAUUAGCCAa-----AGUGAAa -5' |
|||||||
| 22655 | 5' | -43.4 | NC_005091.1 | + | 1528 | 1.06 | 0.026037 |
|
Target: 5'- cGUUGUCACGAUAAUCGGUUUCACUUUu -3' miRNA: 3'- -CAACAGUGCUAUUAGCCAAAGUGAAA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home