miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22656 3' -57.4 NC_005091.1 + 38217 0.66 0.645986
Target:  5'- -cGCCAUGuaguGCGCGUCcaccauGCGACGAUGa- -3'
miRNA:   3'- uuCGGUGC----UGCGUAG------CGCUGCUGCgg -5'
22656 3' -57.4 NC_005091.1 + 37876 0.66 0.645986
Target:  5'- aGGGCUGCG-CGCGUgCGgGAa-GCGCCa -3'
miRNA:   3'- -UUCGGUGCuGCGUA-GCgCUgcUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 21389 0.66 0.645986
Target:  5'- cGGGCgGCcuCGCGUaCGCGGCGGCGa- -3'
miRNA:   3'- -UUCGgUGcuGCGUA-GCGCUGCUGCgg -5'
22656 3' -57.4 NC_005091.1 + 44275 0.66 0.645986
Target:  5'- uGAGCCACauggcaGACGCAcUCGgGGaaaauaccgaGugGCCg -3'
miRNA:   3'- -UUCGGUG------CUGCGU-AGCgCUg---------CugCGG- -5'
22656 3' -57.4 NC_005091.1 + 49781 0.66 0.645986
Target:  5'- aGAGCUACG-CGCAaUGCGuCGACcgGCUc -3'
miRNA:   3'- -UUCGGUGCuGCGUaGCGCuGCUG--CGG- -5'
22656 3' -57.4 NC_005091.1 + 17986 0.66 0.645986
Target:  5'- -cGagGCGACGUAUCGUGAucuCGuuCGCCa -3'
miRNA:   3'- uuCggUGCUGCGUAGCGCU---GCu-GCGG- -5'
22656 3' -57.4 NC_005091.1 + 30015 0.66 0.635198
Target:  5'- cAGCgGCGucuGCGCAccCGUGACGGgGUCa -3'
miRNA:   3'- uUCGgUGC---UGCGUa-GCGCUGCUgCGG- -5'
22656 3' -57.4 NC_005091.1 + 33217 0.66 0.635198
Target:  5'- cGAGgC-CGGCGUAaugCGCGGCGACcaucuGCCc -3'
miRNA:   3'- -UUCgGuGCUGCGUa--GCGCUGCUG-----CGG- -5'
22656 3' -57.4 NC_005091.1 + 51869 0.66 0.635198
Target:  5'- cAGGaUCGCGAgCGCAUCGgcaaACGACGCUc -3'
miRNA:   3'- -UUC-GGUGCU-GCGUAGCgc--UGCUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 28140 0.66 0.635198
Target:  5'- cGGCCgGCGugGCGuccgucgucuUCGCGuCGaaaucggugacaGCGCCg -3'
miRNA:   3'- uUCGG-UGCugCGU----------AGCGCuGC------------UGCGG- -5'
22656 3' -57.4 NC_005091.1 + 12982 0.66 0.635198
Target:  5'- cGGGCCgaGCGGCGUAUUGCc-UGcCGCCa -3'
miRNA:   3'- -UUCGG--UGCUGCGUAGCGcuGCuGCGG- -5'
22656 3' -57.4 NC_005091.1 + 56813 0.66 0.635198
Target:  5'- uGGCUGCaccGCGCAgccaGCGACGGCaauuGCCg -3'
miRNA:   3'- uUCGGUGc--UGCGUag--CGCUGCUG----CGG- -5'
22656 3' -57.4 NC_005091.1 + 14291 0.66 0.624407
Target:  5'- -cGUCACGAUGCGuaucggcuUCGCGGUGuCGUCg -3'
miRNA:   3'- uuCGGUGCUGCGU--------AGCGCUGCuGCGG- -5'
22656 3' -57.4 NC_005091.1 + 45990 0.66 0.624407
Target:  5'- cGAGgCugGACGCugaagaagcgcUCGCGcACcGCGCCg -3'
miRNA:   3'- -UUCgGugCUGCGu----------AGCGC-UGcUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 20020 0.66 0.623328
Target:  5'- -cGCCACGAacgGCGUUaucacugccguggGCGGCGauugguucgaguGCGCCg -3'
miRNA:   3'- uuCGGUGCUg--CGUAG-------------CGCUGC------------UGCGG- -5'
22656 3' -57.4 NC_005091.1 + 10807 0.66 0.613623
Target:  5'- cGGCCAaggcGCGCAUUgcacucggcaGCGACGAC-CCg -3'
miRNA:   3'- uUCGGUgc--UGCGUAG----------CGCUGCUGcGG- -5'
22656 3' -57.4 NC_005091.1 + 31133 0.66 0.613623
Target:  5'- gAAGCguuccCGAUGCAaCGCGugGACuucgGCCg -3'
miRNA:   3'- -UUCGgu---GCUGCGUaGCGCugCUG----CGG- -5'
22656 3' -57.4 NC_005091.1 + 13773 0.66 0.602854
Target:  5'- -cGUCACGugGUcgGUCGgcaCGACGGagaGCCg -3'
miRNA:   3'- uuCGGUGCugCG--UAGC---GCUGCUg--CGG- -5'
22656 3' -57.4 NC_005091.1 + 52643 0.66 0.602854
Target:  5'- --aCCGCG-UGCGUCGCGcCGaucccguguGCGCCa -3'
miRNA:   3'- uucGGUGCuGCGUAGCGCuGC---------UGCGG- -5'
22656 3' -57.4 NC_005091.1 + 50468 0.66 0.602854
Target:  5'- --aUCuuGACaGCAUCGCG-CGACGCUu -3'
miRNA:   3'- uucGGugCUG-CGUAGCGCuGCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.