miRNA display CGI


Results 1 - 20 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22656 3' -57.4 NC_005091.1 + 167 0.67 0.570726
Target:  5'- uAGGUCugaACGAgGCAgcCGUGGCGcACGCCu -3'
miRNA:   3'- -UUCGG---UGCUgCGUa-GCGCUGC-UGCGG- -5'
22656 3' -57.4 NC_005091.1 + 411 0.76 0.172579
Target:  5'- aGAGCgCGCGguucucACGCA-CGCGACGGCGCa -3'
miRNA:   3'- -UUCG-GUGC------UGCGUaGCGCUGCUGCGg -5'
22656 3' -57.4 NC_005091.1 + 754 0.67 0.549534
Target:  5'- ---gCGCGGCGCAgucCGCGuagauuuccGCGAUGCCc -3'
miRNA:   3'- uucgGUGCUGCGUa--GCGC---------UGCUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 995 0.72 0.295846
Target:  5'- cAGGCCugcuCGACGCGggCGCGcugcuCGGCGUCa -3'
miRNA:   3'- -UUCGGu---GCUGCGUa-GCGCu----GCUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 1991 0.74 0.207548
Target:  5'- -cGCaCACGACGCuGUCGCGGCcAUGCUg -3'
miRNA:   3'- uuCG-GUGCUGCG-UAGCGCUGcUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 2071 0.67 0.528593
Target:  5'- uGGCCGCGACaGCGUCGaUGuGCGuguacaGCCg -3'
miRNA:   3'- uUCGGUGCUG-CGUAGC-GC-UGCug----CGG- -5'
22656 3' -57.4 NC_005091.1 + 2216 0.68 0.497762
Target:  5'- cGGCC-UGACGC-UCGaCGugGAagaCGCCa -3'
miRNA:   3'- uUCGGuGCUGCGuAGC-GCugCU---GCGG- -5'
22656 3' -57.4 NC_005091.1 + 2298 1.1 0.000586
Target:  5'- gAAGCCACGACGCAUCGCGACGACGCCg -3'
miRNA:   3'- -UUCGGUGCUGCGUAGCGCUGCUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 2376 0.75 0.202201
Target:  5'- -cGUCGCGAUGCGUCGUGGCuucuUGCCa -3'
miRNA:   3'- uuCGGUGCUGCGUAGCGCUGcu--GCGG- -5'
22656 3' -57.4 NC_005091.1 + 3619 0.69 0.448289
Target:  5'- -cGUCACGGCGUgcaggAUCGgGAacagcgaGACGCCu -3'
miRNA:   3'- uuCGGUGCUGCG-----UAGCgCUg------CUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 7064 0.68 0.487663
Target:  5'- aAGGCCgccaaGCGACuccugaaggGCAUCGaGACGGcCGCCg -3'
miRNA:   3'- -UUCGG-----UGCUG---------CGUAGCgCUGCU-GCGG- -5'
22656 3' -57.4 NC_005091.1 + 9513 0.66 0.59211
Target:  5'- cGGGUCGUGGCaCAUCGCGAggcCGGCaGCCg -3'
miRNA:   3'- -UUCGGUGCUGcGUAGCGCU---GCUG-CGG- -5'
22656 3' -57.4 NC_005091.1 + 10807 0.66 0.613623
Target:  5'- cGGCCAaggcGCGCAUUgcacucggcaGCGACGAC-CCg -3'
miRNA:   3'- uUCGGUgc--UGCGUAG----------CGCUGCUGcGG- -5'
22656 3' -57.4 NC_005091.1 + 11476 0.73 0.261332
Target:  5'- cAGGCCGaaGCGCAgcgugaCGCGGcCGACGCCc -3'
miRNA:   3'- -UUCGGUgcUGCGUa-----GCGCU-GCUGCGG- -5'
22656 3' -57.4 NC_005091.1 + 11531 0.69 0.438721
Target:  5'- cAGCCggaucgucaagGCGAaaGCGUCGgcCGACGugGCCg -3'
miRNA:   3'- uUCGG-----------UGCUg-CGUAGC--GCUGCugCGG- -5'
22656 3' -57.4 NC_005091.1 + 12362 0.7 0.410739
Target:  5'- aAAGaCCGCGacgaGCGCGgccagUGCGACGGCGgCg -3'
miRNA:   3'- -UUC-GGUGC----UGCGUa----GCGCUGCUGCgG- -5'
22656 3' -57.4 NC_005091.1 + 12982 0.66 0.635198
Target:  5'- cGGGCCgaGCGGCGUAUUGCc-UGcCGCCa -3'
miRNA:   3'- -UUCGG--UGCUGCGUAGCGcuGCuGCGG- -5'
22656 3' -57.4 NC_005091.1 + 13473 0.72 0.310612
Target:  5'- uAGGCCGCGAuacuCGaAUgGCGACGguGCGCCg -3'
miRNA:   3'- -UUCGGUGCU----GCgUAgCGCUGC--UGCGG- -5'
22656 3' -57.4 NC_005091.1 + 13588 0.69 0.419944
Target:  5'- cGAGCaGCGACGUgaacgGUCuCGGCGGCGCa -3'
miRNA:   3'- -UUCGgUGCUGCG-----UAGcGCUGCUGCGg -5'
22656 3' -57.4 NC_005091.1 + 13773 0.66 0.602854
Target:  5'- -cGUCACGugGUcgGUCGgcaCGACGGagaGCCg -3'
miRNA:   3'- uuCGGUGCugCG--UAGC---GCUGCUg--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.