miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22656 5' -51.5 NC_005091.1 + 29002 0.66 0.917636
Target:  5'- -cGAUGCCGaCGAGaACGGgcagGCGCa -3'
miRNA:   3'- acUUACGGUaGUUC-UGCCagcaCGCG- -5'
22656 5' -51.5 NC_005091.1 + 11652 0.66 0.917636
Target:  5'- cGcAUGCCGUCAGGAagucgcCGGccuucagcggcUCGaugGCGCg -3'
miRNA:   3'- aCuUACGGUAGUUCU------GCC-----------AGCa--CGCG- -5'
22656 5' -51.5 NC_005091.1 + 25867 0.66 0.917636
Target:  5'- cGGAUGCCG---AGGCGuUCGgcuUGCGCc -3'
miRNA:   3'- aCUUACGGUaguUCUGCcAGC---ACGCG- -5'
22656 5' -51.5 NC_005091.1 + 49674 0.66 0.91381
Target:  5'- ----cGCCGUCAucggguaucggguagAGcCGGUCGacgcauUGCGCg -3'
miRNA:   3'- acuuaCGGUAGU---------------UCuGCCAGC------ACGCG- -5'
22656 5' -51.5 NC_005091.1 + 18125 0.66 0.911201
Target:  5'- ----cGCUgAUCGAGAacacguCGGUCG-GCGCg -3'
miRNA:   3'- acuuaCGG-UAGUUCU------GCCAGCaCGCG- -5'
22656 5' -51.5 NC_005091.1 + 26384 0.66 0.897474
Target:  5'- cUGAcgGgCAUUcAGGCGGUC-UGCuGCg -3'
miRNA:   3'- -ACUuaCgGUAGuUCUGCCAGcACG-CG- -5'
22656 5' -51.5 NC_005091.1 + 25239 0.66 0.882631
Target:  5'- ----cGCUAUgGcGGCGGUCgGUGCGUc -3'
miRNA:   3'- acuuaCGGUAgUuCUGCCAG-CACGCG- -5'
22656 5' -51.5 NC_005091.1 + 2658 0.66 0.882631
Target:  5'- -cGAUGCCAUCGAGAauuUGGUCGa---- -3'
miRNA:   3'- acUUACGGUAGUUCU---GCCAGCacgcg -5'
22656 5' -51.5 NC_005091.1 + 24575 0.67 0.874804
Target:  5'- -cGGUGUCgAUCGGGGCGGcgUCGUugcaagGCGCg -3'
miRNA:   3'- acUUACGG-UAGUUCUGCC--AGCA------CGCG- -5'
22656 5' -51.5 NC_005091.1 + 11888 0.67 0.874804
Target:  5'- cUGAAauCCGUgAAG-CGGUUGUGCuGCa -3'
miRNA:   3'- -ACUUacGGUAgUUCuGCCAGCACG-CG- -5'
22656 5' -51.5 NC_005091.1 + 7082 0.67 0.874804
Target:  5'- cUGAagGgCAUCGAGACGGcCGc-CGCu -3'
miRNA:   3'- -ACUuaCgGUAGUUCUGCCaGCacGCG- -5'
22656 5' -51.5 NC_005091.1 + 55562 0.67 0.858369
Target:  5'- aUGAAcGCCGUCGaauucAGcGCGGUCcacGCGCu -3'
miRNA:   3'- -ACUUaCGGUAGU-----UC-UGCCAGca-CGCG- -5'
22656 5' -51.5 NC_005091.1 + 50837 0.67 0.848904
Target:  5'- cGAAcUGCggcucgaUAUCAAGcguGCGGccgUCGUGCGCg -3'
miRNA:   3'- aCUU-ACG-------GUAGUUC---UGCC---AGCACGCG- -5'
22656 5' -51.5 NC_005091.1 + 48611 0.67 0.848904
Target:  5'- gGGcgGCCGUCGGGGucccaucCGG-CGagGCGCg -3'
miRNA:   3'- aCUuaCGGUAGUUCU-------GCCaGCa-CGCG- -5'
22656 5' -51.5 NC_005091.1 + 27239 0.68 0.793548
Target:  5'- ----gGCCAUCAAGAggcUGG-CGUcGCGCc -3'
miRNA:   3'- acuuaCGGUAGUUCU---GCCaGCA-CGCG- -5'
22656 5' -51.5 NC_005091.1 + 22752 0.69 0.773279
Target:  5'- ----gGCCGUCAGcGCGGcguucaggcgCGUGCGCu -3'
miRNA:   3'- acuuaCGGUAGUUcUGCCa---------GCACGCG- -5'
22656 5' -51.5 NC_005091.1 + 52101 0.69 0.773279
Target:  5'- cGuAUGCCGUgaaAAGGCGGcCGUcgccgGCGCg -3'
miRNA:   3'- aCuUACGGUAg--UUCUGCCaGCA-----CGCG- -5'
22656 5' -51.5 NC_005091.1 + 9945 0.69 0.76291
Target:  5'- aGGAUGaUCGUCAcguacggccacGGAUGGUCGUGgaaauCGCg -3'
miRNA:   3'- aCUUAC-GGUAGU-----------UCUGCCAGCAC-----GCG- -5'
22656 5' -51.5 NC_005091.1 + 26455 0.69 0.7524
Target:  5'- cUGAAUGcCCGUCAGGAC---CGcGCGCg -3'
miRNA:   3'- -ACUUAC-GGUAGUUCUGccaGCaCGCG- -5'
22656 5' -51.5 NC_005091.1 + 52386 0.69 0.741762
Target:  5'- cGGAUGUUcgCGAGACGG-CG-GCGg -3'
miRNA:   3'- aCUUACGGuaGUUCUGCCaGCaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.