miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22664 3' -54.9 NC_005091.1 + 45072 0.66 0.75274
Target:  5'- aACAUGGuaauCCCuauGCCCGcaugguUCGAugcGCUGUCg -3'
miRNA:   3'- aUGUACCu---GGG---UGGGU------AGCU---UGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 14008 0.66 0.74229
Target:  5'- --aGUGGAUCgACUCGUCGcGCCGg- -3'
miRNA:   3'- augUACCUGGgUGGGUAGCuUGGCag -5'
22664 3' -54.9 NC_005091.1 + 48375 0.66 0.719994
Target:  5'- gGCGgagGGGaaaCCACCCAUuCGGACCuugagugGUCg -3'
miRNA:   3'- aUGUa--CCUg--GGUGGGUA-GCUUGG-------CAG- -5'
22664 3' -54.9 NC_005091.1 + 17742 0.66 0.710313
Target:  5'- aACGaGGAuaCCgACCuCAUCGAGCCGg- -3'
miRNA:   3'- aUGUaCCU--GGgUGG-GUAGCUUGGCag -5'
22664 3' -54.9 NC_005091.1 + 40816 0.67 0.688588
Target:  5'- cACAUGcGACCUGUCC-UCGAuugaaACCGUCg -3'
miRNA:   3'- aUGUAC-CUGGGUGGGuAGCU-----UGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 10245 0.67 0.677637
Target:  5'- aGCggGGGCCgAUCuCAUCGAACUGa- -3'
miRNA:   3'- aUGuaCCUGGgUGG-GUAGCUUGGCag -5'
22664 3' -54.9 NC_005091.1 + 55279 0.67 0.677637
Target:  5'- -cCAUGGACaCCGCCgA---AACCGUCa -3'
miRNA:   3'- auGUACCUG-GGUGGgUagcUUGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 17561 0.69 0.57838
Target:  5'- aGCGUGucGACgCAacCCCGUCGAAUCGUUa -3'
miRNA:   3'- aUGUAC--CUGgGU--GGGUAGCUUGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 21129 0.69 0.567454
Target:  5'- -cCAUGGGCggguugcaauCCACCCAccagugaaUCGAACCGg- -3'
miRNA:   3'- auGUACCUG----------GGUGGGU--------AGCUUGGCag -5'
22664 3' -54.9 NC_005091.1 + 8110 0.69 0.549006
Target:  5'- gUGCAUGcGACCCagugggcgaaggaGCCCGgcaUCGAgauuacgcgcuacugGCCGUCa -3'
miRNA:   3'- -AUGUAC-CUGGG-------------UGGGU---AGCU---------------UGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 36322 0.7 0.512717
Target:  5'- gGCGUGccGACCCGCUugucauccgccguCAUCGAcucGCCGUCc -3'
miRNA:   3'- aUGUAC--CUGGGUGG-------------GUAGCU---UGGCAG- -5'
22664 3' -54.9 NC_005091.1 + 6501 0.74 0.310719
Target:  5'- cGCAUGGugCCGCCCGacUCGAuccacAUCGUg -3'
miRNA:   3'- aUGUACCugGGUGGGU--AGCU-----UGGCAg -5'
22664 3' -54.9 NC_005091.1 + 7796 1.08 0.001191
Target:  5'- cUACAUGGACCCACCCAUCGAACCGUCg -3'
miRNA:   3'- -AUGUACCUGGGUGGGUAGCUUGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.