miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22664 5' -52 NC_005091.1 + 27064 0.66 0.901427
Target:  5'- uCGGCGcAGgCGAUGAaggacgcgaagaAGGCGAUuGACg -3'
miRNA:   3'- uGCUGU-UCgGCUACU------------UCCGCUA-CUGg -5'
22664 5' -52 NC_005091.1 + 51766 0.66 0.901427
Target:  5'- uACGAuaCGAGCgCGuAUGAc-GCGAUGAUCg -3'
miRNA:   3'- -UGCU--GUUCG-GC-UACUucCGCUACUGG- -5'
22664 5' -52 NC_005091.1 + 44836 0.66 0.901427
Target:  5'- cACGGC-GGCCGGcaAGGGCGgcGGCa -3'
miRNA:   3'- -UGCUGuUCGGCUacUUCCGCuaCUGg -5'
22664 5' -52 NC_005091.1 + 4227 0.66 0.901427
Target:  5'- gACGGCuguGGCagagGAUGAAGuGCGGcgugccgGGCCa -3'
miRNA:   3'- -UGCUGu--UCGg---CUACUUC-CGCUa------CUGG- -5'
22664 5' -52 NC_005091.1 + 10720 0.66 0.901427
Target:  5'- aACG-CAAGCaccCGAUGAaggaguggcgggAGGCGAUcaagaaGGCCa -3'
miRNA:   3'- -UGCuGUUCG---GCUACU------------UCCGCUA------CUGG- -5'
22664 5' -52 NC_005091.1 + 46921 0.66 0.901427
Target:  5'- -aGACAAGCUGAacgUGAAGcGCauccucGACCa -3'
miRNA:   3'- ugCUGUUCGGCU---ACUUC-CGcua---CUGG- -5'
22664 5' -52 NC_005091.1 + 6824 0.66 0.894351
Target:  5'- cGCGACcguGCCGGgcugcuucuUGuuGGCGAcggcGACCg -3'
miRNA:   3'- -UGCUGuu-CGGCU---------ACuuCCGCUa---CUGG- -5'
22664 5' -52 NC_005091.1 + 32823 0.66 0.893628
Target:  5'- gGCGGCcgaguagcaguucGAGUCGAUGAcGGCcAUGAUg -3'
miRNA:   3'- -UGCUG-------------UUCGGCUACUuCCGcUACUGg -5'
22664 5' -52 NC_005091.1 + 40048 0.66 0.882464
Target:  5'- gGCGACGcGUCGAaggggcugcauguccUGAAGGaguGcAUGACCg -3'
miRNA:   3'- -UGCUGUuCGGCU---------------ACUUCCg--C-UACUGG- -5'
22664 5' -52 NC_005091.1 + 10231 0.66 0.882464
Target:  5'- gACGACAAgcGCCGAgcGggGGCcgaucucaucgaacuGAUGgagGCCg -3'
miRNA:   3'- -UGCUGUU--CGGCUa-CuuCCG---------------CUAC---UGG- -5'
22664 5' -52 NC_005091.1 + 31197 0.66 0.879385
Target:  5'- aACGACAugccGCCGAUGAucGGCugcucGCCg -3'
miRNA:   3'- -UGCUGUu---CGGCUACUu-CCGcuac-UGG- -5'
22664 5' -52 NC_005091.1 + 25074 0.66 0.877048
Target:  5'- cGCGGCGuucaaccgaucggcGGCCac-GGAGGCGGUcGCCa -3'
miRNA:   3'- -UGCUGU--------------UCGGcuaCUUCCGCUAcUGG- -5'
22664 5' -52 NC_005091.1 + 29741 0.66 0.871505
Target:  5'- cGCaACAAGCCgcGAUGAucGCGAUcaaucaGACCg -3'
miRNA:   3'- -UGcUGUUCGG--CUACUucCGCUA------CUGG- -5'
22664 5' -52 NC_005091.1 + 44748 0.67 0.854985
Target:  5'- gACGAaAAGUCGAUGGacgacgcgaAGGCGAUcAUCa -3'
miRNA:   3'- -UGCUgUUCGGCUACU---------UCCGCUAcUGG- -5'
22664 5' -52 NC_005091.1 + 57212 0.67 0.84636
Target:  5'- gGCGGCGAGUCGcgGAAgcuGGCGuucGAUa -3'
miRNA:   3'- -UGCUGUUCGGCuaCUU---CCGCua-CUGg -5'
22664 5' -52 NC_005091.1 + 7186 0.67 0.837504
Target:  5'- cACGAgCAAGaCgGAUGgcGGCGAgcagcgagcGGCCg -3'
miRNA:   3'- -UGCU-GUUC-GgCUACuuCCGCUa--------CUGG- -5'
22664 5' -52 NC_005091.1 + 34532 0.67 0.837504
Target:  5'- gGCGGaucAGaCCGGUGAAGGuCGA-GAUCg -3'
miRNA:   3'- -UGCUgu-UC-GGCUACUUCC-GCUaCUGG- -5'
22664 5' -52 NC_005091.1 + 36566 0.67 0.837504
Target:  5'- cCGACuuucAAGCUGuUGAAGuGgGAUGACUg -3'
miRNA:   3'- uGCUG----UUCGGCuACUUC-CgCUACUGG- -5'
22664 5' -52 NC_005091.1 + 34551 0.67 0.828425
Target:  5'- gGCGACu-GCCGAgugGGAccgcgcGGCGAaccGGCCg -3'
miRNA:   3'- -UGCUGuuCGGCUa--CUU------CCGCUa--CUGG- -5'
22664 5' -52 NC_005091.1 + 38777 0.67 0.828425
Target:  5'- cUGACAucuGCCuaguGAUGAAGGCaGAgGACUa -3'
miRNA:   3'- uGCUGUu--CGG----CUACUUCCG-CUaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.