miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22671 3' -58.5 NC_005091.1 + 16082 0.66 0.607587
Target:  5'- -aCUUCGUaGUGCCGGCCGuugcACC-CGg -3'
miRNA:   3'- gaGAGGCAgCACGGCUGGC----UGGuGCa -5'
22671 3' -58.5 NC_005091.1 + 44530 0.66 0.607587
Target:  5'- ---gCCGUCGcUGCCGucgccuucgucGCCGcCCGCGUc -3'
miRNA:   3'- gagaGGCAGC-ACGGC-----------UGGCuGGUGCA- -5'
22671 3' -58.5 NC_005091.1 + 34741 0.66 0.606528
Target:  5'- uUCgugaagCCGUCGuUGUCGGCCaugucccGGCCGCGc -3'
miRNA:   3'- gAGa-----GGCAGC-ACGGCUGG-------CUGGUGCa -5'
22671 3' -58.5 NC_005091.1 + 45237 0.66 0.597015
Target:  5'- -gCUCUGUCGU-CU-ACCGGCCGCGc -3'
miRNA:   3'- gaGAGGCAGCAcGGcUGGCUGGUGCa -5'
22671 3' -58.5 NC_005091.1 + 22733 0.66 0.597015
Target:  5'- ---aCCGUCGUGUacguCGAggauaCGACCACGUc -3'
miRNA:   3'- gagaGGCAGCACG----GCUg----GCUGGUGCA- -5'
22671 3' -58.5 NC_005091.1 + 31301 0.66 0.574915
Target:  5'- gCUCaagCGUCGUGCCGgcgagcaGCCGAUCAuCGg -3'
miRNA:   3'- -GAGag-GCAGCACGGC-------UGGCUGGU-GCa -5'
22671 3' -58.5 NC_005091.1 + 16028 0.66 0.565498
Target:  5'- ----gCGUCGUGCUGccGCCGGCCGgCGg -3'
miRNA:   3'- gagagGCAGCACGGC--UGGCUGGU-GCa -5'
22671 3' -58.5 NC_005091.1 + 36849 0.67 0.503986
Target:  5'- aUCggCCG-CGUauGCCuGACCGACUACGa -3'
miRNA:   3'- gAGa-GGCaGCA--CGG-CUGGCUGGUGCa -5'
22671 3' -58.5 NC_005091.1 + 48797 0.68 0.461735
Target:  5'- aUCUCCGugucgcUCGUgcagugccgcauugGCCGGCCGugCGCa- -3'
miRNA:   3'- gAGAGGC------AGCA--------------CGGCUGGCugGUGca -5'
22671 3' -58.5 NC_005091.1 + 13817 0.68 0.455033
Target:  5'- ----gCGUCGUGCUGACCG-UCACGc -3'
miRNA:   3'- gagagGCAGCACGGCUGGCuGGUGCa -5'
22671 3' -58.5 NC_005091.1 + 16880 0.69 0.408765
Target:  5'- -cCUCCGUCGUcaCCGGCCGAggGCGa -3'
miRNA:   3'- gaGAGGCAGCAc-GGCUGGCUggUGCa -5'
22671 3' -58.5 NC_005091.1 + 18015 0.69 0.408765
Target:  5'- ---cCCGUCGcGCCGGCCGucuACCGCa- -3'
miRNA:   3'- gagaGGCAGCaCGGCUGGC---UGGUGca -5'
22671 3' -58.5 NC_005091.1 + 24335 0.7 0.365548
Target:  5'- gUCgaCCGUCGUGCCG-CCGAucuUCugGUa -3'
miRNA:   3'- gAGa-GGCAGCACGGCuGGCU---GGugCA- -5'
22671 3' -58.5 NC_005091.1 + 15144 0.7 0.363058
Target:  5'- -aCUUCGUCGUuccugccguugcGCCcggaucggggacgaGACCGGCCGCGUg -3'
miRNA:   3'- gaGAGGCAGCA------------CGG--------------CUGGCUGGUGCA- -5'
22671 3' -58.5 NC_005091.1 + 7613 0.73 0.243244
Target:  5'- -cUUCCGcCGUGCCGACCGGCgAUu- -3'
miRNA:   3'- gaGAGGCaGCACGGCUGGCUGgUGca -5'
22671 3' -58.5 NC_005091.1 + 13686 1.07 0.000824
Target:  5'- gCUCUCCGUCGUGCCGACCGACCACGUg -3'
miRNA:   3'- -GAGAGGCAGCACGGCUGGCUGGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.