miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22671 5' -55 NC_005091.1 + 53156 0.66 0.759779
Target:  5'- -cGCGUGAuuCCGCuGuAGcGCGCGGGCGc -3'
miRNA:   3'- guUGCACU--GGUGcCuUC-UGCGUCCGC- -5'
22671 5' -55 NC_005091.1 + 22606 0.66 0.739164
Target:  5'- -----cGACCACGGAaaaAGACG-AGGCc -3'
miRNA:   3'- guugcaCUGGUGCCU---UCUGCgUCCGc -5'
22671 5' -55 NC_005091.1 + 32846 0.66 0.739164
Target:  5'- uCGACGc--CCuCGGGAGGgGCGGGCa -3'
miRNA:   3'- -GUUGCacuGGuGCCUUCUgCGUCCGc -5'
22671 5' -55 NC_005091.1 + 6448 0.66 0.728692
Target:  5'- gCAGCGUGcgcGCUGCGcuGAAGgaaGCAGGCGc -3'
miRNA:   3'- -GUUGCAC---UGGUGC--CUUCug-CGUCCGC- -5'
22671 5' -55 NC_005091.1 + 37216 0.67 0.707473
Target:  5'- aGGCGUuccGGCgGcCGGAAGAUGUcGGCGa -3'
miRNA:   3'- gUUGCA---CUGgU-GCCUUCUGCGuCCGC- -5'
22671 5' -55 NC_005091.1 + 31594 0.67 0.696748
Target:  5'- cCGGCGUGcCCGC-GAAGGCuGCuuGGCGu -3'
miRNA:   3'- -GUUGCACuGGUGcCUUCUG-CGu-CCGC- -5'
22671 5' -55 NC_005091.1 + 37449 0.67 0.696748
Target:  5'- uCAACGggUGACaGCGGAggaAGugGCGacGGCGa -3'
miRNA:   3'- -GUUGC--ACUGgUGCCU---UCugCGU--CCGC- -5'
22671 5' -55 NC_005091.1 + 25075 0.67 0.69244
Target:  5'- gCGGCGUucaaccgaucggcGGCCACGGAGGcggucgccaucgacGCGCcGGCu -3'
miRNA:   3'- -GUUGCA-------------CUGGUGCCUUC--------------UGCGuCCGc -5'
22671 5' -55 NC_005091.1 + 40205 0.68 0.631478
Target:  5'- ---aGUGGCUGCGGcAGGAcuCGCAcGGCGg -3'
miRNA:   3'- guugCACUGGUGCC-UUCU--GCGU-CCGC- -5'
22671 5' -55 NC_005091.1 + 37156 0.68 0.628197
Target:  5'- --cCGUGACUucgacGCGGAAGucuucgucggcccgGCGCAGuGCGg -3'
miRNA:   3'- guuGCACUGG-----UGCCUUC--------------UGCGUC-CGC- -5'
22671 5' -55 NC_005091.1 + 42017 0.69 0.576994
Target:  5'- aGACGagauuccGACCACGGAu--CGUAGGCa -3'
miRNA:   3'- gUUGCa------CUGGUGCCUucuGCGUCCGc -5'
22671 5' -55 NC_005091.1 + 38889 0.69 0.555455
Target:  5'- cCGGCGUcGCgGUGaGAAGAUGCAGGCGc -3'
miRNA:   3'- -GUUGCAcUGgUGC-CUUCUGCGUCCGC- -5'
22671 5' -55 NC_005091.1 + 32781 0.7 0.513154
Target:  5'- gGGCGUcgaGACCaccuucguugcgGCGGAAGcgaugGCGUAGGCGg -3'
miRNA:   3'- gUUGCA---CUGG------------UGCCUUC-----UGCGUCCGC- -5'
22671 5' -55 NC_005091.1 + 27482 0.71 0.462261
Target:  5'- uGACGgcuaucggGAagcaCACGuucGAGGACGCAGGCGg -3'
miRNA:   3'- gUUGCa-------CUg---GUGC---CUUCUGCGUCCGC- -5'
22671 5' -55 NC_005091.1 + 16651 0.72 0.433029
Target:  5'- aCGGCGUGggguACgCACGGaAAGACGgGGGCu -3'
miRNA:   3'- -GUUGCAC----UG-GUGCC-UUCUGCgUCCGc -5'
22671 5' -55 NC_005091.1 + 19560 0.72 0.423526
Target:  5'- -----aGGCCACGGAGGGCacgccGCAGGCc -3'
miRNA:   3'- guugcaCUGGUGCCUUCUG-----CGUCCGc -5'
22671 5' -55 NC_005091.1 + 11502 0.73 0.360671
Target:  5'- cCGACGUGGCCGcCGcGAaacAGGgGCAGGCc -3'
miRNA:   3'- -GUUGCACUGGU-GC-CU---UCUgCGUCCGc -5'
22671 5' -55 NC_005091.1 + 44651 0.74 0.335796
Target:  5'- aCGACGcGGCCGagaaGGcgcucgaagAAGACGCGGGCGg -3'
miRNA:   3'- -GUUGCaCUGGUg---CC---------UUCUGCGUCCGC- -5'
22671 5' -55 NC_005091.1 + 13721 1.09 0.001279
Target:  5'- uCAACGUGACCACGGAAGACGCAGGCGa -3'
miRNA:   3'- -GUUGCACUGGUGCCUUCUGCGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.