miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22672 5' -58.2 NC_005091.1 + 27231 0.66 0.61564
Target:  5'- uGUCcu-UCGGCCaucaagaGGCUGGCGucgcGCCGCa -3'
miRNA:   3'- -CAGcauAGCCGGc------CCGGCUGU----UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 24412 0.66 0.61564
Target:  5'- aUCGg--CGGCaCGacGGUCGACGGCCaGCc -3'
miRNA:   3'- cAGCauaGCCG-GC--CCGGCUGUUGG-CG- -5'
22672 5' -58.2 NC_005091.1 + 44789 0.66 0.605002
Target:  5'- uUCGUGccuUCGGCCGccuuGCCGcCGcccguACCGCc -3'
miRNA:   3'- cAGCAU---AGCCGGCc---CGGCuGU-----UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 13833 0.66 0.603939
Target:  5'- aGUCGUGcagaacuUCGGCuCGGGCgGuuCGcCUGCg -3'
miRNA:   3'- -CAGCAU-------AGCCG-GCCCGgCu-GUuGGCG- -5'
22672 5' -58.2 NC_005091.1 + 36762 0.66 0.594385
Target:  5'- gGUCGUAgUCGGUCaGGCauacGCGGCCGa -3'
miRNA:   3'- -CAGCAU-AGCCGGcCCGgc--UGUUGGCg -5'
22672 5' -58.2 NC_005091.1 + 16122 0.66 0.583799
Target:  5'- -aCGUggGUUGuGCCGccGGCCGGCGGCaGCa -3'
miRNA:   3'- caGCA--UAGC-CGGC--CCGGCUGUUGgCG- -5'
22672 5' -58.2 NC_005091.1 + 30204 0.66 0.57325
Target:  5'- uUCGUcgCcGGCCGGGgCGucuuCGACCu- -3'
miRNA:   3'- cAGCAuaG-CCGGCCCgGCu---GUUGGcg -5'
22672 5' -58.2 NC_005091.1 + 45285 0.66 0.57325
Target:  5'- aUCGagaaggCGGUCGGGCaCGAguauuuGCCGCg -3'
miRNA:   3'- cAGCaua---GCCGGCCCG-GCUgu----UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 18233 0.66 0.57325
Target:  5'- cUCG-AUC-GCCGGGCCGcgaagcuCGGCCGa -3'
miRNA:   3'- cAGCaUAGcCGGCCCGGCu------GUUGGCg -5'
22672 5' -58.2 NC_005091.1 + 46317 0.66 0.57325
Target:  5'- cGUCGUaguuGUCGGCCGucuCCGACcACuCGUg -3'
miRNA:   3'- -CAGCA----UAGCCGGCcc-GGCUGuUG-GCG- -5'
22672 5' -58.2 NC_005091.1 + 49979 0.67 0.567992
Target:  5'- cGUCGgccugcaUAUCGGCacacgcaccgcagGGGCCGACGaugccaacugauACCGUu -3'
miRNA:   3'- -CAGC-------AUAGCCGg------------CCCGGCUGU------------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 4166 0.67 0.562747
Target:  5'- cGUCagGUCGGCUGGGa-GAUGGCCGa -3'
miRNA:   3'- -CAGcaUAGCCGGCCCggCUGUUGGCg -5'
22672 5' -58.2 NC_005091.1 + 40643 0.67 0.562747
Target:  5'- -cCGUGcUCGGCgCGGGauaccgacUCGGCGGCgGCg -3'
miRNA:   3'- caGCAU-AGCCG-GCCC--------GGCUGUUGgCG- -5'
22672 5' -58.2 NC_005091.1 + 14755 0.67 0.556469
Target:  5'- -gCGguUGUCGGCCcGGCCGAuacgacgagcuacaaCAACgGCg -3'
miRNA:   3'- caGC--AUAGCCGGcCCGGCU---------------GUUGgCG- -5'
22672 5' -58.2 NC_005091.1 + 12962 0.67 0.552296
Target:  5'- gGUUGUgggccacgGUCGuCCGGGCCGAgCGgcguauugccuGCCGCc -3'
miRNA:   3'- -CAGCA--------UAGCcGGCCCGGCU-GU-----------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 26319 0.67 0.551254
Target:  5'- cUCGUAUUcgGGCUGccgcucaGGCCGAagcuGCCGCc -3'
miRNA:   3'- cAGCAUAG--CCGGC-------CCGGCUgu--UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 17858 0.67 0.551254
Target:  5'- -cCGcUAUCGGCCGGGaCCugugcgaGAuCGGCCGg -3'
miRNA:   3'- caGC-AUAGCCGGCCC-GG-------CU-GUUGGCg -5'
22672 5' -58.2 NC_005091.1 + 7248 0.67 0.541904
Target:  5'- cUCGUGUCGGCgCGGGUCucuuuuccuUGGCCGg -3'
miRNA:   3'- cAGCAUAGCCG-GCCCGGcu-------GUUGGCg -5'
22672 5' -58.2 NC_005091.1 + 54988 0.67 0.521324
Target:  5'- cUCGUc-CGGCCGGGCgGcCcGCCGg -3'
miRNA:   3'- cAGCAuaGCCGGCCCGgCuGuUGGCg -5'
22672 5' -58.2 NC_005091.1 + 21535 0.67 0.521324
Target:  5'- cUCGgcUUGGuCCGGGgUG-UAGCCGCu -3'
miRNA:   3'- cAGCauAGCC-GGCCCgGCuGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.