miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22672 5' -58.2 NC_005091.1 + 40928 0.67 0.511148
Target:  5'- -gCGUA-CGGCCGaGGuuGugAaccugaacACCGCg -3'
miRNA:   3'- caGCAUaGCCGGC-CCggCugU--------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 34751 0.69 0.433143
Target:  5'- cGUCGuUGUCGGCCaugucccGGCCGcgcgcgucgGCGAuCCGCu -3'
miRNA:   3'- -CAGC-AUAGCCGGc------CCGGC---------UGUU-GGCG- -5'
22672 5' -58.2 NC_005091.1 + 14185 0.69 0.433143
Target:  5'- --gGUAcUGGCCGcucGCCGACGacACCGCg -3'
miRNA:   3'- cagCAUaGCCGGCc--CGGCUGU--UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 9697 0.69 0.442523
Target:  5'- ----cAUCGaCCGGGCCuuCAGCCGCc -3'
miRNA:   3'- cagcaUAGCcGGCCCGGcuGUUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 53344 0.69 0.442523
Target:  5'- cUCGgcUaCGaGCCGGGCCauuguGGCcGCCGCc -3'
miRNA:   3'- cAGCauA-GC-CGGCCCGG-----CUGuUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 8081 0.68 0.452016
Target:  5'- -aCGUAgCGGCCGauguaggaacGGCCGACGugCauGCg -3'
miRNA:   3'- caGCAUaGCCGGC----------CCGGCUGUugG--CG- -5'
22672 5' -58.2 NC_005091.1 + 31759 0.68 0.470353
Target:  5'- cGUCcgaggCGGCCGGGUuccaCGGCAcgagcagGCCGCc -3'
miRNA:   3'- -CAGcaua-GCCGGCCCG----GCUGU-------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 45708 0.68 0.471328
Target:  5'- cGUCGgccgCGcGCCGcGCCGGCuACUGCu -3'
miRNA:   3'- -CAGCaua-GC-CGGCcCGGCUGuUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 54097 0.68 0.491051
Target:  5'- uGUCGcguUCGGUCGcGCCGuGCAAUUGCg -3'
miRNA:   3'- -CAGCau-AGCCGGCcCGGC-UGUUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 37054 0.69 0.414738
Target:  5'- -cCGcacUGcGCCGGGCCGACGAagacuuCCGCg -3'
miRNA:   3'- caGCauaGC-CGGCCCGGCUGUU------GGCG- -5'
22672 5' -58.2 NC_005091.1 + 47159 0.69 0.39682
Target:  5'- -gCGUucaaCGGCUGGGCUGAagGAUCGCu -3'
miRNA:   3'- caGCAua--GCCGGCCCGGCUg-UUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 25800 0.7 0.370897
Target:  5'- cGUCGUugcgcCGGCUGccuuGGCCGACAcggcgaacuuGCCGUa -3'
miRNA:   3'- -CAGCAua---GCCGGC----CCGGCUGU----------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 22327 0.73 0.22868
Target:  5'- cUCGUGUCGuCCGGGCgaaGACGaaacaccggauaGCCGCg -3'
miRNA:   3'- cAGCAUAGCcGGCCCGg--CUGU------------UGGCG- -5'
22672 5' -58.2 NC_005091.1 + 30493 0.73 0.240535
Target:  5'- -gCGU-UCGGCUGGGCCGGgaccauCAGCgGCg -3'
miRNA:   3'- caGCAuAGCCGGCCCGGCU------GUUGgCG- -5'
22672 5' -58.2 NC_005091.1 + 17142 0.72 0.265778
Target:  5'- -aCGUAUCGGCCGuaauGCCGGuCuGCUGCa -3'
miRNA:   3'- caGCAUAGCCGGCc---CGGCU-GuUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 26586 0.72 0.272415
Target:  5'- aGUCGUucgaaguccCGGCCGccGCCGGCcGCCGCa -3'
miRNA:   3'- -CAGCAua-------GCCGGCc-CGGCUGuUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 14521 0.72 0.279184
Target:  5'- -gCGUGccgcUCGauGCCGGGgCGACGGCUGCu -3'
miRNA:   3'- caGCAU----AGC--CGGCCCgGCUGUUGGCG- -5'
22672 5' -58.2 NC_005091.1 + 9671 0.71 0.300294
Target:  5'- cUCGUGUccCGGCUGGGCCaGCGACUc- -3'
miRNA:   3'- cAGCAUA--GCCGGCCCGGcUGUUGGcg -5'
22672 5' -58.2 NC_005091.1 + 32175 0.71 0.318054
Target:  5'- cUCGUAUCGGCCGGaUCGgaaguaacuuccgguGCGGCgGCa -3'
miRNA:   3'- cAGCAUAGCCGGCCcGGC---------------UGUUGgCG- -5'
22672 5' -58.2 NC_005091.1 + 16003 0.7 0.346154
Target:  5'- -aCGgcuacAUCGGUCaGGCCGACAagcgucgugcuGCCGCc -3'
miRNA:   3'- caGCa----UAGCCGGcCCGGCUGU-----------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.