miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22676 3' -54.9 NC_005091.1 + 52322 0.66 0.776573
Target:  5'- uGCUGCGUCGcaugcgacGUUgAGG-CGACGGGCGa -3'
miRNA:   3'- cCGAUGUAGC--------CAG-UCCgGCUGUUCGC- -5'
22676 3' -54.9 NC_005091.1 + 48720 0.66 0.766532
Target:  5'- aGGCUACG-CGG-CGGGCUG-Cu-GCGu -3'
miRNA:   3'- -CCGAUGUaGCCaGUCCGGCuGuuCGC- -5'
22676 3' -54.9 NC_005091.1 + 37199 0.66 0.76552
Target:  5'- cGGcCUGCGauaCGGUCAGGCguucCGGCGgccggaagaugucGGCGa -3'
miRNA:   3'- -CC-GAUGUa--GCCAGUCCG----GCUGU-------------UCGC- -5'
22676 3' -54.9 NC_005091.1 + 26310 0.66 0.74605
Target:  5'- gGGCUGCcgC--UCAGGCCGA--AGCu -3'
miRNA:   3'- -CCGAUGuaGccAGUCCGGCUguUCGc -5'
22676 3' -54.9 NC_005091.1 + 14710 0.66 0.735632
Target:  5'- cGCUAaCAUCcGagAGGCCGcuuGCGAGCGc -3'
miRNA:   3'- cCGAU-GUAGcCagUCCGGC---UGUUCGC- -5'
22676 3' -54.9 NC_005091.1 + 267 0.67 0.725111
Target:  5'- cGGCUACGaaUCGGUauuuGGCgCGcagaACAAGCc -3'
miRNA:   3'- -CCGAUGU--AGCCAgu--CCG-GC----UGUUCGc -5'
22676 3' -54.9 NC_005091.1 + 57661 0.67 0.725111
Target:  5'- cGGCUACGaaUCGGUauuuGGCgCGcagaACAAGCc -3'
miRNA:   3'- -CCGAUGU--AGCCAgu--CCG-GC----UGUUCGc -5'
22676 3' -54.9 NC_005091.1 + 28071 0.67 0.724054
Target:  5'- cGGCUGCAUCcggcuugacuuGGaagcggccguucuUCAGGUCGAUguugaaguucguGAGCGg -3'
miRNA:   3'- -CCGAUGUAG-----------CC-------------AGUCCGGCUG------------UUCGC- -5'
22676 3' -54.9 NC_005091.1 + 4439 0.67 0.714499
Target:  5'- uGGCaUGCAgcUUGGUaggCAGGUCGAgCGGGCa -3'
miRNA:   3'- -CCG-AUGU--AGCCA---GUCCGGCU-GUUCGc -5'
22676 3' -54.9 NC_005091.1 + 8074 0.67 0.703806
Target:  5'- gGGCUGCAcguagCGGcCGauguaggaacGGCCGACGugcauGCGa -3'
miRNA:   3'- -CCGAUGUa----GCCaGU----------CCGGCUGUu----CGC- -5'
22676 3' -54.9 NC_005091.1 + 14493 0.67 0.703806
Target:  5'- gGGCUgcugaACGUCGGUgc-GCCGGUAAGCGu -3'
miRNA:   3'- -CCGA-----UGUAGCCAgucCGGCUGUUCGC- -5'
22676 3' -54.9 NC_005091.1 + 26098 0.67 0.689803
Target:  5'- cGGCgUACGUCGGcgugCAGGgCGcgauuaaccuugcgGCGGGCGc -3'
miRNA:   3'- -CCG-AUGUAGCCa---GUCCgGC--------------UGUUCGC- -5'
22676 3' -54.9 NC_005091.1 + 44900 0.67 0.671355
Target:  5'- aGGCaAUcgCGGaagCAGGCgGuACGGGCGg -3'
miRNA:   3'- -CCGaUGuaGCCa--GUCCGgC-UGUUCGC- -5'
22676 3' -54.9 NC_005091.1 + 26421 0.68 0.660451
Target:  5'- gGGCUGCcaucguagCGGcCGGGCgCGAgCAGGCc -3'
miRNA:   3'- -CCGAUGua------GCCaGUCCG-GCU-GUUCGc -5'
22676 3' -54.9 NC_005091.1 + 43508 0.68 0.627622
Target:  5'- cGGUUACuUCGGcugUCAGGUCGucaAAGCa -3'
miRNA:   3'- -CCGAUGuAGCC---AGUCCGGCug-UUCGc -5'
22676 3' -54.9 NC_005091.1 + 9506 0.68 0.627622
Target:  5'- uGGC-ACAUCGcg-AGGCCGGCAGccGCGa -3'
miRNA:   3'- -CCGaUGUAGCcagUCCGGCUGUU--CGC- -5'
22676 3' -54.9 NC_005091.1 + 14456 0.69 0.583946
Target:  5'- cGGCU--GUCcgGGUCAGGCgGGCAAcuacGCGa -3'
miRNA:   3'- -CCGAugUAG--CCAGUCCGgCUGUU----CGC- -5'
22676 3' -54.9 NC_005091.1 + 45813 0.69 0.583946
Target:  5'- cGGCUcgguGCAUCGGaagagCAGuaGCCGGCGcGGCGc -3'
miRNA:   3'- -CCGA----UGUAGCCa----GUC--CGGCUGU-UCGC- -5'
22676 3' -54.9 NC_005091.1 + 12952 0.69 0.58069
Target:  5'- cGCUACAUcagguugugggccaCGGUCguccGGGCCGAgcGGCGu -3'
miRNA:   3'- cCGAUGUA--------------GCCAG----UCCGGCUguUCGC- -5'
22676 3' -54.9 NC_005091.1 + 13960 0.69 0.551574
Target:  5'- cGGCUGCAUC-GUCGGcGCCG-CA-GCu -3'
miRNA:   3'- -CCGAUGUAGcCAGUC-CGGCuGUuCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.