miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22676 5' -60.4 NC_005091.1 + 16244 0.66 0.489605
Target:  5'- cGCCGGCauGCGauGCGCcGCUCGCGa-- -3'
miRNA:   3'- -CGGCCGgcCGC--CGUGuUGGGUGCaag -5'
22676 5' -60.4 NC_005091.1 + 33219 0.66 0.489605
Target:  5'- --aGGCCGGCGuaauGCGCGgcgaccaucuGCCCGCGc-- -3'
miRNA:   3'- cggCCGGCCGC----CGUGU----------UGGGUGCaag -5'
22676 5' -60.4 NC_005091.1 + 762 0.66 0.479776
Target:  5'- -gCGGauuCGcGCGGCGCAGUCCGCGUa- -3'
miRNA:   3'- cgGCCg--GC-CGCCGUGUUGGGUGCAag -5'
22676 5' -60.4 NC_005091.1 + 17157 0.66 0.470045
Target:  5'- uGCCGGUCuGCuGCACGAUCaGCGUg- -3'
miRNA:   3'- -CGGCCGGcCGcCGUGUUGGgUGCAag -5'
22676 5' -60.4 NC_005091.1 + 28062 0.66 0.470045
Target:  5'- uGUCGGCCGGCgaucagaucaugGGUGCGuUCCGC-UUCa -3'
miRNA:   3'- -CGGCCGGCCG------------CCGUGUuGGGUGcAAG- -5'
22676 5' -60.4 NC_005091.1 + 25033 0.66 0.470045
Target:  5'- gGUCGGCacugCGGCGGCcgaauCGAUCUACGa-- -3'
miRNA:   3'- -CGGCCG----GCCGCCGu----GUUGGGUGCaag -5'
22676 5' -60.4 NC_005091.1 + 4380 0.66 0.460415
Target:  5'- -aCGGCCGGCGcgaaCACGA-CCACGg-- -3'
miRNA:   3'- cgGCCGGCCGCc---GUGUUgGGUGCaag -5'
22676 5' -60.4 NC_005091.1 + 9086 0.66 0.450891
Target:  5'- cGUgGGUCGGCGucgugcugaaGCGCAACCC-CGa-- -3'
miRNA:   3'- -CGgCCGGCCGC----------CGUGUUGGGuGCaag -5'
22676 5' -60.4 NC_005091.1 + 40471 0.66 0.449944
Target:  5'- cGCCucUUGGCGGgACAugucgauACCCAUGUUCu -3'
miRNA:   3'- -CGGccGGCCGCCgUGU-------UGGGUGCAAG- -5'
22676 5' -60.4 NC_005091.1 + 9429 0.67 0.432173
Target:  5'- uGCCGGCCucGCGaugugcCACGACCCGUGUUa -3'
miRNA:   3'- -CGGCCGGc-CGCc-----GUGUUGGGUGCAAg -5'
22676 5' -60.4 NC_005091.1 + 55059 0.67 0.432173
Target:  5'- cCCGGCCGGacgaggGGCGCAgaaaacgggacaGCCgCGCGg-- -3'
miRNA:   3'- cGGCCGGCCg-----CCGUGU------------UGG-GUGCaag -5'
22676 5' -60.4 NC_005091.1 + 34417 0.67 0.422986
Target:  5'- aGCgCGGCCGGCcGCAgGGCUaCugGaUUCa -3'
miRNA:   3'- -CG-GCCGGCCGcCGUgUUGG-GugC-AAG- -5'
22676 5' -60.4 NC_005091.1 + 57307 0.67 0.422986
Target:  5'- uCCGGuuGGUGGC-CGGCCaugaugACGUUg -3'
miRNA:   3'- cGGCCggCCGCCGuGUUGGg-----UGCAAg -5'
22676 5' -60.4 NC_005091.1 + 3301 0.67 0.420253
Target:  5'- -gCGGCCGGCGGCgagguugaacuucaGCAcAUCCGCa--- -3'
miRNA:   3'- cgGCCGGCCGCCG--------------UGU-UGGGUGcaag -5'
22676 5' -60.4 NC_005091.1 + 1463 0.67 0.413917
Target:  5'- aGCCGGacgauCCGGCGGC-CGGCCUcUGa-- -3'
miRNA:   3'- -CGGCC-----GGCCGCCGuGUUGGGuGCaag -5'
22676 5' -60.4 NC_005091.1 + 16160 0.67 0.413917
Target:  5'- aCgGGUagGGUGGCACAGCCCAUu--- -3'
miRNA:   3'- cGgCCGg-CCGCCGUGUUGGGUGcaag -5'
22676 5' -60.4 NC_005091.1 + 9271 0.67 0.404969
Target:  5'- cGCCGGCugcaCGGCGaCGCAGgCUcaucauACGUUCg -3'
miRNA:   3'- -CGGCCG----GCCGCcGUGUUgGG------UGCAAG- -5'
22676 5' -60.4 NC_005091.1 + 26342 0.67 0.404969
Target:  5'- cCCGGCCgcuacgauGGCaGCcccgGCGGCCCGCGcgCg -3'
miRNA:   3'- cGGCCGG--------CCGcCG----UGUUGGGUGCaaG- -5'
22676 5' -60.4 NC_005091.1 + 53463 0.67 0.396143
Target:  5'- aGCCGcGcCCGuGCGGCaagcggaagACGACaCCGCGUaUCg -3'
miRNA:   3'- -CGGC-C-GGC-CGCCG---------UGUUG-GGUGCA-AG- -5'
22676 5' -60.4 NC_005091.1 + 54008 0.67 0.390908
Target:  5'- -gCGGCCGGCGucucgcuuuuccagcGCgACGGCgCACGUUUu -3'
miRNA:   3'- cgGCCGGCCGC---------------CG-UGUUGgGUGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.