miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2268 3' -57.9 NC_001405.1 + 11142 0.66 0.443745
Target:  5'- gUGCCCUgcaugUCUGCCGcUGCUcuugcucuuGCCGCu -3'
miRNA:   3'- -AUGGGGaua--GGACGGC-ACGGu--------UGGCG- -5'
2268 3' -57.9 NC_001405.1 + 14238 0.66 0.443745
Target:  5'- -uCCCCUGgaCCcGCCGUuuguGCCu-CCGCg -3'
miRNA:   3'- auGGGGAUa-GGaCGGCA----CGGuuGGCG- -5'
2268 3' -57.9 NC_001405.1 + 10905 0.66 0.443745
Target:  5'- gACCCCcgGUUCgagucucggGCCG-GCCgGACUGCg -3'
miRNA:   3'- aUGGGGa-UAGGa--------CGGCaCGG-UUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 18595 0.66 0.424039
Target:  5'- cGCCCUagccgcgcGUCCcugcGCCGUGCCGccagcgguCCGCg -3'
miRNA:   3'- aUGGGGa-------UAGGa---CGGCACGGUu-------GGCG- -5'
2268 3' -57.9 NC_001405.1 + 11205 0.66 0.404865
Target:  5'- cACCaUCUG-CC-GCCGcGUCAGCCGCg -3'
miRNA:   3'- aUGG-GGAUaGGaCGGCaCGGUUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 1398 0.67 0.389925
Target:  5'- aUACaCCCggugGUCCcGCUGUGCCccauuaaaccaguuGCCGUg -3'
miRNA:   3'- -AUG-GGGa---UAGGaCGGCACGGu-------------UGGCG- -5'
2268 3' -57.9 NC_001405.1 + 14774 0.67 0.377152
Target:  5'- aACCCCguucugCCUGCCcacuuucaaguaGUGCUccacGAUCGCg -3'
miRNA:   3'- aUGGGGaua---GGACGG------------CACGG----UUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 11742 0.68 0.331407
Target:  5'- aUGCCUCguUGUcCCUGCUGUGCugcacuauaaggaaCAGCUGCg -3'
miRNA:   3'- -AUGGGG--AUA-GGACGGCACG--------------GUUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 12136 0.7 0.245305
Target:  5'- gGCCUCUcuAUCgccgCUGcCCGUGCCAGCCa- -3'
miRNA:   3'- aUGGGGA--UAG----GAC-GGCACGGUUGGcg -5'
2268 3' -57.9 NC_001405.1 + 24554 0.71 0.208829
Target:  5'- cUACCCCguaUUUGCCGUGCCAGaggUGCu -3'
miRNA:   3'- -AUGGGGauaGGACGGCACGGUUg--GCG- -5'
2268 3' -57.9 NC_001405.1 + 26806 0.71 0.192407
Target:  5'- cGCUgCUGUUgCUGCCGcUGCCGcuGCCGCc -3'
miRNA:   3'- aUGGgGAUAG-GACGGC-ACGGU--UGGCG- -5'
2268 3' -57.9 NC_001405.1 + 2233 0.72 0.167552
Target:  5'- gGCUCUgcUCCUGCCGccGCC-GCCGCc -3'
miRNA:   3'- aUGGGGauAGGACGGCa-CGGuUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 10664 0.72 0.161577
Target:  5'- aACCCCggAUCCgGCCGUccGCCGugauccaugcgguuACCGCc -3'
miRNA:   3'- aUGGGGa-UAGGaCGGCA--CGGU--------------UGGCG- -5'
2268 3' -57.9 NC_001405.1 + 26893 0.74 0.122763
Target:  5'- cGCUCCUccUCCUGCUGcUGCC-GCCGCu -3'
miRNA:   3'- aUGGGGAu-AGGACGGC-ACGGuUGGCG- -5'
2268 3' -57.9 NC_001405.1 + 24618 1.1 0.000212
Target:  5'- aUACCCCUAUCCUGCCGUGCCAACCGCa -3'
miRNA:   3'- -AUGGGGAUAGGACGGCACGGUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.