miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22680 5' -51.2 NC_005091.1 + 29297 0.66 0.934734
Target:  5'- cCGUCGAUCAGgUCuuccggacuguCGCGGAcGACa- -3'
miRNA:   3'- aGCAGUUAGUCgAGu----------GCGCCU-UUGgg -5'
22680 5' -51.2 NC_005091.1 + 32482 0.66 0.93419
Target:  5'- gCGUCAAUCAGCccgagguUCAgCGCaucgucuGCCCg -3'
miRNA:   3'- aGCAGUUAGUCG-------AGU-GCGccuu---UGGG- -5'
22680 5' -51.2 NC_005091.1 + 1595 0.66 0.929165
Target:  5'- gCGUCGAUCAGCgcgccUACGCauauGugCCg -3'
miRNA:   3'- aGCAGUUAGUCGa----GUGCGccu-UugGG- -5'
22680 5' -51.2 NC_005091.1 + 7912 0.66 0.929165
Target:  5'- aCGUCAAggaGGC-CGa--GGAAACCCa -3'
miRNA:   3'- aGCAGUUag-UCGaGUgcgCCUUUGGG- -5'
22680 5' -51.2 NC_005091.1 + 41425 0.66 0.923308
Target:  5'- aCGagcUgGAUCAGCUCAucaacgauCGCGGcGugCCg -3'
miRNA:   3'- aGC---AgUUAGUCGAGU--------GCGCCuUugGG- -5'
22680 5' -51.2 NC_005091.1 + 31861 0.66 0.923308
Target:  5'- cUCGUCGGcggcCuGCUCGugcCGUGG-AACCCg -3'
miRNA:   3'- -AGCAGUUa---GuCGAGU---GCGCCuUUGGG- -5'
22680 5' -51.2 NC_005091.1 + 39869 0.66 0.917165
Target:  5'- aCGUCAGUCcuuGCgauagaACGCGGccGACCa -3'
miRNA:   3'- aGCAGUUAGu--CGag----UGCGCCu-UUGGg -5'
22680 5' -51.2 NC_005091.1 + 28166 0.66 0.917165
Target:  5'- gCGUCGAaaUCGGUgacaGCGCcGAcGCCCg -3'
miRNA:   3'- aGCAGUU--AGUCGag--UGCGcCUuUGGG- -5'
22680 5' -51.2 NC_005091.1 + 25372 0.66 0.917165
Target:  5'- uUCGUCAugucgaCGGCgaacuuggucCACGCGuccgcGAAGCCCa -3'
miRNA:   3'- -AGCAGUua----GUCGa---------GUGCGC-----CUUUGGG- -5'
22680 5' -51.2 NC_005091.1 + 44355 0.66 0.910737
Target:  5'- aUCG-CGuguUC-GCUCACGUaGAGGCCCc -3'
miRNA:   3'- -AGCaGUu--AGuCGAGUGCGcCUUUGGG- -5'
22680 5' -51.2 NC_005091.1 + 46557 0.66 0.904025
Target:  5'- aUGUgAccAUCAGCUCGCGCGacGGCUUg -3'
miRNA:   3'- aGCAgU--UAGUCGAGUGCGCcuUUGGG- -5'
22680 5' -51.2 NC_005091.1 + 41809 0.66 0.904025
Target:  5'- aCGUCAucaAGCggGCGUGGAAugCg -3'
miRNA:   3'- aGCAGUuagUCGagUGCGCCUUugGg -5'
22680 5' -51.2 NC_005091.1 + 45242 0.67 0.897033
Target:  5'- gUCGUCuacCGGC-CGCGCGuugcGCCCg -3'
miRNA:   3'- -AGCAGuuaGUCGaGUGCGCcuu-UGGG- -5'
22680 5' -51.2 NC_005091.1 + 26142 0.67 0.897033
Target:  5'- gUCGUgGuAUCAGCgcgUGCGCGGcGAGCUg -3'
miRNA:   3'- -AGCAgU-UAGUCGa--GUGCGCC-UUUGGg -5'
22680 5' -51.2 NC_005091.1 + 55533 0.67 0.882224
Target:  5'- aUGaCGGUC-GCcgUCACGCGGAAGgCCu -3'
miRNA:   3'- aGCaGUUAGuCG--AGUGCGCCUUUgGG- -5'
22680 5' -51.2 NC_005091.1 + 6987 0.67 0.874417
Target:  5'- gCGUC-AUCgAGCUgCugGCGGAAGgCa -3'
miRNA:   3'- aGCAGuUAG-UCGA-GugCGCCUUUgGg -5'
22680 5' -51.2 NC_005091.1 + 2640 0.67 0.86635
Target:  5'- -gGUCGAUCAGUUC--GgGGucGCCCa -3'
miRNA:   3'- agCAGUUAGUCGAGugCgCCuuUGGG- -5'
22680 5' -51.2 NC_005091.1 + 7065 0.68 0.861388
Target:  5'- cCGcCAG-CAGCUCgaugacGCGCGGGucggcguuguagagcAGCCCg -3'
miRNA:   3'- aGCaGUUaGUCGAG------UGCGCCU---------------UUGGG- -5'
22680 5' -51.2 NC_005091.1 + 462 0.68 0.858031
Target:  5'- -gGUCGAUCAGCgcgCAgGCGacAAGCCg -3'
miRNA:   3'- agCAGUUAGUCGa--GUgCGCc-UUUGGg -5'
22680 5' -51.2 NC_005091.1 + 6598 0.68 0.858031
Target:  5'- -aGUCGAUgAucGCUCGCGCGGcguCCg -3'
miRNA:   3'- agCAGUUAgU--CGAGUGCGCCuuuGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.