miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22681 3' -51.8 NC_005091.1 + 55219 0.66 0.912756
Target:  5'- ---cUCGUucGACGc-GGCCCGUGCGc -3'
miRNA:   3'- guacAGCGcuUUGCuuUCGGGCACGC- -5'
22681 3' -51.8 NC_005091.1 + 54258 0.66 0.897834
Target:  5'- cCGUGUCGUcuaAAGCGAAGcGCCCGacacugagcaagGCGg -3'
miRNA:   3'- -GUACAGCGc--UUUGCUUU-CGGGCa-----------CGC- -5'
22681 3' -51.8 NC_005091.1 + 19535 0.66 0.88463
Target:  5'- --cGUCGUGuucGGCGAuuGCUgGUGCa -3'
miRNA:   3'- guaCAGCGCu--UUGCUuuCGGgCACGc -5'
22681 3' -51.8 NC_005091.1 + 54678 0.66 0.883871
Target:  5'- cCAUGcuggaaUCGCGcgGCGAAAGCaaaugguCCGUGuCGg -3'
miRNA:   3'- -GUAC------AGCGCuuUGCUUUCG-------GGCAC-GC- -5'
22681 3' -51.8 NC_005091.1 + 26855 0.66 0.876918
Target:  5'- -----gGCGaAGACGcGAGCCgGUGCGg -3'
miRNA:   3'- guacagCGC-UUUGCuUUCGGgCACGC- -5'
22681 3' -51.8 NC_005091.1 + 2875 0.67 0.843529
Target:  5'- ---cUCGCG-AACGgcAGCCCGaGCGc -3'
miRNA:   3'- guacAGCGCuUUGCuuUCGGGCaCGC- -5'
22681 3' -51.8 NC_005091.1 + 24024 0.67 0.843529
Target:  5'- ---uUCGCGuc-CGGGAuGCCCGUGCc -3'
miRNA:   3'- guacAGCGCuuuGCUUU-CGGGCACGc -5'
22681 3' -51.8 NC_005091.1 + 940 0.67 0.843529
Target:  5'- --cGUCGCGuacgaccCGGAAGCCguCGUGCc -3'
miRNA:   3'- guaCAGCGCuuu----GCUUUCGG--GCACGc -5'
22681 3' -51.8 NC_005091.1 + 15160 0.68 0.816052
Target:  5'- --cGUUGCGcccggaucggGGACGAGaccGGCCgCGUGCGu -3'
miRNA:   3'- guaCAGCGC----------UUUGCUU---UCGG-GCACGC- -5'
22681 3' -51.8 NC_005091.1 + 41896 0.68 0.816052
Target:  5'- --gGUCGUucAACGgcGGCCgCGUGCa -3'
miRNA:   3'- guaCAGCGcuUUGCuuUCGG-GCACGc -5'
22681 3' -51.8 NC_005091.1 + 50332 0.68 0.80648
Target:  5'- gCcgGUCGCGAAAauCGAccuGCCCGUaCGu -3'
miRNA:   3'- -GuaCAGCGCUUU--GCUuu-CGGGCAcGC- -5'
22681 3' -51.8 NC_005091.1 + 19791 0.68 0.78678
Target:  5'- cCAUGagCGUGAuGCGAuuGCCgaCGUGCGu -3'
miRNA:   3'- -GUACa-GCGCUuUGCUuuCGG--GCACGC- -5'
22681 3' -51.8 NC_005091.1 + 43538 0.68 0.78678
Target:  5'- --aGUCGUca---GAAAGCCUGUGCGc -3'
miRNA:   3'- guaCAGCGcuuugCUUUCGGGCACGC- -5'
22681 3' -51.8 NC_005091.1 + 34927 0.69 0.756012
Target:  5'- --cGUCGCGGcucucGCGAGAGaCCGUGUc -3'
miRNA:   3'- guaCAGCGCUu----UGCUUUCgGGCACGc -5'
22681 3' -51.8 NC_005091.1 + 50561 0.7 0.713214
Target:  5'- --cGUCGUaAGGCGGAuguuGCCgGUGCGg -3'
miRNA:   3'- guaCAGCGcUUUGCUUu---CGGgCACGC- -5'
22681 3' -51.8 NC_005091.1 + 12742 0.7 0.713214
Target:  5'- --cGUCGCGuucauuCGcuGGCCCcGUGCGa -3'
miRNA:   3'- guaCAGCGCuuu---GCuuUCGGG-CACGC- -5'
22681 3' -51.8 NC_005091.1 + 54096 0.72 0.602044
Target:  5'- -uUGUCGCGuu-CGGucGCgCCGUGCa -3'
miRNA:   3'- guACAGCGCuuuGCUuuCG-GGCACGc -5'
22681 3' -51.8 NC_005091.1 + 51585 0.75 0.403655
Target:  5'- ---cUCGCGAuGCGAuagaacuGGCCCGUGCa -3'
miRNA:   3'- guacAGCGCUuUGCUu------UCGGGCACGc -5'
22681 3' -51.8 NC_005091.1 + 19280 1.1 0.002369
Target:  5'- gCAUGUCGCGAAACGAAAGCCCGUGCGa -3'
miRNA:   3'- -GUACAGCGCUUUGCUUUCGGGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.