miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22681 5' -61.6 NC_005091.1 + 17622 0.66 0.401926
Target:  5'- aCGCUCCCG---GCCGCGCaucuUCGCAa-- -3'
miRNA:   3'- -GUGAGGGCucgCGGCGCG----AGCGUgua -5'
22681 5' -61.6 NC_005091.1 + 46292 0.66 0.401926
Target:  5'- cCACUCgugccagaguUCGAG-GCCGCGCUCGUg--- -3'
miRNA:   3'- -GUGAG----------GGCUCgCGGCGCGAGCGugua -5'
22681 5' -61.6 NC_005091.1 + 47345 0.66 0.384403
Target:  5'- aACUUCaaaGAcGCGCUGcCGCUCGUGCGg -3'
miRNA:   3'- gUGAGGg--CU-CGCGGC-GCGAGCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 10147 0.66 0.374984
Target:  5'- gCACgCgCCGAGCGCCGCacGUUCcugauguGCGCGUg -3'
miRNA:   3'- -GUGaG-GGCUCGCGGCG--CGAG-------CGUGUA- -5'
22681 5' -61.6 NC_005091.1 + 6725 0.66 0.367394
Target:  5'- aGCgaagCagaCGAGCG-CGCGCUCGgGCAUg -3'
miRNA:   3'- gUGa---Gg--GCUCGCgGCGCGAGCgUGUA- -5'
22681 5' -61.6 NC_005091.1 + 30129 0.67 0.334957
Target:  5'- uUACaggCCCGAG-GCCGaCGCuuUCGCGCGg -3'
miRNA:   3'- -GUGa--GGGCUCgCGGC-GCG--AGCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 33464 0.67 0.327182
Target:  5'- uCACUuucaaUCUGAGCGCgaaGCGCUCGCuCGg -3'
miRNA:   3'- -GUGA-----GGGCUCGCGg--CGCGAGCGuGUa -5'
22681 5' -61.6 NC_005091.1 + 42563 0.67 0.30981
Target:  5'- gCGCUCgCCGAgaagacgcuuguccGCGCCGCGCaCGCuCGg -3'
miRNA:   3'- -GUGAG-GGCU--------------CGCGGCGCGaGCGuGUa -5'
22681 5' -61.6 NC_005091.1 + 40957 0.68 0.290325
Target:  5'- cCGCgUCCCGcccAGCGCUGCGUgcgcugCGCGCc- -3'
miRNA:   3'- -GUG-AGGGC---UCGCGGCGCGa-----GCGUGua -5'
22681 5' -61.6 NC_005091.1 + 14813 0.68 0.290325
Target:  5'- gACU-CCGGGUGCUacgGCGCUCGCAa-- -3'
miRNA:   3'- gUGAgGGCUCGCGG---CGCGAGCGUgua -5'
22681 5' -61.6 NC_005091.1 + 33525 0.68 0.283356
Target:  5'- gACUUCCGAaagagcuucGCGCagCGCGCUCGCGa-- -3'
miRNA:   3'- gUGAGGGCU---------CGCG--GCGCGAGCGUgua -5'
22681 5' -61.6 NC_005091.1 + 10894 0.68 0.279238
Target:  5'- uCGCUgCCGAGUGCaaugCGCGCcuuggccgcgaucguUCGCGCAc -3'
miRNA:   3'- -GUGAgGGCUCGCG----GCGCG---------------AGCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 17406 0.68 0.27652
Target:  5'- uGCUCgUCG-GCGCUGCGUUCGCcuGCAa -3'
miRNA:   3'- gUGAG-GGCuCGCGGCGCGAGCG--UGUa -5'
22681 5' -61.6 NC_005091.1 + 29424 0.69 0.238251
Target:  5'- cCACgaCCGAGaCGCCGCcCUUGCGCGUc -3'
miRNA:   3'- -GUGagGGCUC-GCGGCGcGAGCGUGUA- -5'
22681 5' -61.6 NC_005091.1 + 13213 0.69 0.232908
Target:  5'- cCACUCCCcguaguagaccauuGCGCCGCGaucCGCGCAa -3'
miRNA:   3'- -GUGAGGGcu------------CGCGGCGCga-GCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 50724 0.69 0.232321
Target:  5'- cCGCUCCgGAuaGCCGCGCgcacgacggcCGCACGc -3'
miRNA:   3'- -GUGAGGgCUcgCGGCGCGa---------GCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 36975 0.7 0.220834
Target:  5'- -uCUCCUGAgaucgGCGCgaugauggCGCGCUCGCGCGa -3'
miRNA:   3'- guGAGGGCU-----CGCG--------GCGCGAGCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 6637 0.7 0.215274
Target:  5'- uCAUgCCCGAGCG-CGCGCUCGUcuGCu- -3'
miRNA:   3'- -GUGaGGGCUCGCgGCGCGAGCG--UGua -5'
22681 5' -61.6 NC_005091.1 + 40773 0.71 0.170461
Target:  5'- -cCUCCgGAGCGUagauCGCGCUgCGCACGc -3'
miRNA:   3'- guGAGGgCUCGCG----GCGCGA-GCGUGUa -5'
22681 5' -61.6 NC_005091.1 + 6108 0.71 0.170461
Target:  5'- aACgCCCGAacguccGCGCCGCcCUCGUACAUa -3'
miRNA:   3'- gUGaGGGCU------CGCGGCGcGAGCGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.