miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 3' -54.2 NC_005091.1 + 33559 0.68 0.703506
Target:  5'- gACCUAUGAgCGcgaAAUCGC-GCGCCu -3'
miRNA:   3'- -UGGAUGCUgGCaggUUAGCGaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 7173 0.68 0.700269
Target:  5'- uGCCggcagcgGCGGCCGUCUcgaugcccuucaggAGUCGCUugGCgGCCu -3'
miRNA:   3'- -UGGa------UGCUGGCAGG--------------UUAGCGA--CG-UGG- -5'
22682 3' -54.2 NC_005091.1 + 39163 0.68 0.692695
Target:  5'- uGCUUGCGGCCGUC--GUCGCcucgUGUugUg -3'
miRNA:   3'- -UGGAUGCUGGCAGguUAGCG----ACGugG- -5'
22682 3' -54.2 NC_005091.1 + 4982 0.68 0.68618
Target:  5'- cUCUuCGACCGUggaagcgcgaagcauUCGAUCGCguccUGCGCCg -3'
miRNA:   3'- uGGAuGCUGGCA---------------GGUUAGCG----ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 51234 0.68 0.681826
Target:  5'- ---aACGGCCGU-CAAUCGCcGCGCg -3'
miRNA:   3'- uggaUGCUGGCAgGUUAGCGaCGUGg -5'
22682 3' -54.2 NC_005091.1 + 52757 0.68 0.681826
Target:  5'- gGCgUGCGcgcCCGUCUggUCGUgucGUACCu -3'
miRNA:   3'- -UGgAUGCu--GGCAGGuuAGCGa--CGUGG- -5'
22682 3' -54.2 NC_005091.1 + 30786 0.68 0.670911
Target:  5'- aACCgGCGAaccgUCGUCCAGUCGCgaGCGg- -3'
miRNA:   3'- -UGGaUGCU----GGCAGGUUAGCGa-CGUgg -5'
22682 3' -54.2 NC_005091.1 + 43860 0.68 0.659958
Target:  5'- gAUCgaacGCgGAUCGUCCAGUCGCaaCGCCg -3'
miRNA:   3'- -UGGa---UG-CUGGCAGGUUAGCGacGUGG- -5'
22682 3' -54.2 NC_005091.1 + 15230 0.69 0.637986
Target:  5'- uGCC-ACGuaGCCGUCC---CGCUGcCGCCg -3'
miRNA:   3'- -UGGaUGC--UGGCAGGuuaGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 23371 0.69 0.626987
Target:  5'- uCCUACGgcaGCCGgggcagCCGA-CGCaGCGCCg -3'
miRNA:   3'- uGGAUGC---UGGCa-----GGUUaGCGaCGUGG- -5'
22682 3' -54.2 NC_005091.1 + 37008 0.69 0.626987
Target:  5'- uCCgUGCGACgGaUCGAUCGUaUGCACCg -3'
miRNA:   3'- uGG-AUGCUGgCaGGUUAGCG-ACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 23286 0.69 0.605013
Target:  5'- uGCCgccCGGCUGaCCGA-CGaCUGCACCg -3'
miRNA:   3'- -UGGau-GCUGGCaGGUUaGC-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 29702 0.7 0.583131
Target:  5'- aGCgUACGGCCcUCCcgcUCGCccGCACCg -3'
miRNA:   3'- -UGgAUGCUGGcAGGuu-AGCGa-CGUGG- -5'
22682 3' -54.2 NC_005091.1 + 39876 0.7 0.572247
Target:  5'- uCCUugcgauagaacGCGGCCGaCCAuccgGCUGCGCCa -3'
miRNA:   3'- uGGA-----------UGCUGGCaGGUuag-CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 54958 0.7 0.561411
Target:  5'- cGCCgcGCGGCUGUCCcGUUuuCUGCGCCc -3'
miRNA:   3'- -UGGa-UGCUGGCAGGuUAGc-GACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 51905 0.7 0.561411
Target:  5'- cGCC-AUGGCCGUacaCAAUCGC-GCGCa -3'
miRNA:   3'- -UGGaUGCUGGCAg--GUUAGCGaCGUGg -5'
22682 3' -54.2 NC_005091.1 + 17141 0.7 0.539919
Target:  5'- uACgUAuCGGCCGUaaugCCGGUCuGCUGCACg -3'
miRNA:   3'- -UGgAU-GCUGGCA----GGUUAG-CGACGUGg -5'
22682 3' -54.2 NC_005091.1 + 40879 0.7 0.539919
Target:  5'- gACCgUGCaGAgCGcCCAGUCGUUGuCGCCg -3'
miRNA:   3'- -UGG-AUG-CUgGCaGGUUAGCGAC-GUGG- -5'
22682 3' -54.2 NC_005091.1 + 31706 0.71 0.529276
Target:  5'- aGCCgcgcCGGCCG-CCu-UCgGCUGCGCCg -3'
miRNA:   3'- -UGGau--GCUGGCaGGuuAG-CGACGUGG- -5'
22682 3' -54.2 NC_005091.1 + 13820 0.71 0.529276
Target:  5'- uCgUGCuGACCGUCa---CGCUGCGCCc -3'
miRNA:   3'- uGgAUG-CUGGCAGguuaGCGACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.