miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22682 5' -59.6 NC_005091.1 + 27937 0.68 0.429948
Target:  5'- --uGCGCGACGGCCguacGCGuuGUGCg- -3'
miRNA:   3'- gcuUGUGCUGCCGGa---CGCcgCACGgg -5'
22682 5' -59.6 NC_005091.1 + 41425 0.68 0.420814
Target:  5'- aCGAGCugGAuCaGCUcaucaacgaucGCGGCGUGCCg -3'
miRNA:   3'- -GCUUGugCU-GcCGGa----------CGCCGCACGGg -5'
22682 5' -59.6 NC_005091.1 + 7198 0.68 0.415391
Target:  5'- aGAugGCGGCGcguuaccuucgucuuGCCggcaGCGGCGgccgucucgaUGCCCu -3'
miRNA:   3'- gCUugUGCUGC---------------CGGa---CGCCGC----------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 26219 0.68 0.411799
Target:  5'- -cGACGCGGCggcagcuucGGCCUgaGCGGCa-GCCCg -3'
miRNA:   3'- gcUUGUGCUG---------CCGGA--CGCCGcaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 52446 0.68 0.411799
Target:  5'- gGAAuCAgGGCGcGCCggGCGGCGacCCCa -3'
miRNA:   3'- gCUU-GUgCUGC-CGGa-CGCCGCacGGG- -5'
22682 5' -59.6 NC_005091.1 + 24896 0.68 0.401139
Target:  5'- aGAACGgcuuccuCGGCGGCCUGCgcagcacGGCGgaauuccucgGCCUc -3'
miRNA:   3'- gCUUGU-------GCUGCCGGACG-------CCGCa---------CGGG- -5'
22682 5' -59.6 NC_005091.1 + 26352 0.68 0.385483
Target:  5'- aCGAugGCAgcccCGGCGGCCcGCGcGCG-GUCCu -3'
miRNA:   3'- -GCU--UGU----GCUGCCGGaCGC-CGCaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 16801 0.68 0.385483
Target:  5'- gGGACgACGuaGCGGCCUuccuagGCGGCGcguggGCCUu -3'
miRNA:   3'- gCUUG-UGC--UGCCGGA------CGCCGCa----CGGG- -5'
22682 5' -59.6 NC_005091.1 + 5827 0.68 0.384625
Target:  5'- aCGcAGCACGgcucgaaGCGGUgcGCGGCGUGCgCa -3'
miRNA:   3'- -GC-UUGUGC-------UGCCGgaCGCCGCACGgG- -5'
22682 5' -59.6 NC_005091.1 + 46025 0.69 0.376116
Target:  5'- uCGucCACGAUGGCCUGCGcaucgacGCG-GCgCa -3'
miRNA:   3'- -GCuuGUGCUGCCGGACGC-------CGCaCGgG- -5'
22682 5' -59.6 NC_005091.1 + 44609 0.69 0.368568
Target:  5'- aCGAAgGCGACGGCa-GCGaCG-GCCUg -3'
miRNA:   3'- -GCUUgUGCUGCCGgaCGCcGCaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 25445 0.69 0.368568
Target:  5'- aGAACGCGuuguacauGCGaGCCU-CGGCG-GCCUg -3'
miRNA:   3'- gCUUGUGC--------UGC-CGGAcGCCGCaCGGG- -5'
22682 5' -59.6 NC_005091.1 + 49098 0.69 0.360303
Target:  5'- -cGACACGAUGGCCggGCGaaGgGUGCUa -3'
miRNA:   3'- gcUUGUGCUGCCGGa-CGC--CgCACGGg -5'
22682 5' -59.6 NC_005091.1 + 14404 0.69 0.352169
Target:  5'- gGAACGCGuacuGCGuGCCUGCGGUGagaGCgaCCg -3'
miRNA:   3'- gCUUGUGC----UGC-CGGACGCCGCa--CG--GG- -5'
22682 5' -59.6 NC_005091.1 + 3330 0.69 0.344165
Target:  5'- uCGAagGCACGGuuGCUUcCGGCGUGUCCc -3'
miRNA:   3'- -GCU--UGUGCUgcCGGAcGCCGCACGGG- -5'
22682 5' -59.6 NC_005091.1 + 44193 0.69 0.336293
Target:  5'- cCGuGCGCGACaGuGCCguaUGCGGCGUcuucGCCUg -3'
miRNA:   3'- -GCuUGUGCUG-C-CGG---ACGCCGCA----CGGG- -5'
22682 5' -59.6 NC_005091.1 + 31866 0.7 0.320947
Target:  5'- uCGcGCucguCGGCGGCCUGCu-CGUGCCg -3'
miRNA:   3'- -GCuUGu---GCUGCCGGACGccGCACGGg -5'
22682 5' -59.6 NC_005091.1 + 26387 0.7 0.313472
Target:  5'- aCGGGCAUucaGGCGGUCUGCuGCGgcaGCCg -3'
miRNA:   3'- -GCUUGUG---CUGCCGGACGcCGCa--CGGg -5'
22682 5' -59.6 NC_005091.1 + 20106 0.7 0.303953
Target:  5'- -aAGCGCGGCGGUCUGCGccuCGcauacacgaaaggcUGCCCg -3'
miRNA:   3'- gcUUGUGCUGCCGGACGCc--GC--------------ACGGG- -5'
22682 5' -59.6 NC_005091.1 + 18134 0.7 0.291843
Target:  5'- aGAACACGuCGGUCgGCGcgagcuucGCG-GCCCg -3'
miRNA:   3'- gCUUGUGCuGCCGGaCGC--------CGCaCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.