miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22683 3' -53.6 NC_005091.1 + 14451 0.66 0.844084
Target:  5'- uUGAACGUgaaguccaGCGaccCCGCcGUAGCGAUCg -3'
miRNA:   3'- -ACUUGCGg-------CGCa--GGUGcCAUUGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 48900 0.66 0.844084
Target:  5'- cGAugGCCGgGUCUAgcUGGgcGgGAUUu -3'
miRNA:   3'- aCUugCGGCgCAGGU--GCCauUgCUAG- -5'
22683 3' -53.6 NC_005091.1 + 930 0.66 0.826258
Target:  5'- uUGAGCGCCGgGUauuUCAUGGccGCagGAUCg -3'
miRNA:   3'- -ACUUGCGGCgCA---GGUGCCauUG--CUAG- -5'
22683 3' -53.6 NC_005091.1 + 11739 0.66 0.826258
Target:  5'- cUGAAgGCCgGCGacuUCCugACGGcauGCGAUCg -3'
miRNA:   3'- -ACUUgCGG-CGC---AGG--UGCCau-UGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 52565 0.66 0.817033
Target:  5'- gGAuCGgCGCGacgCaCGCGGUAACGAa- -3'
miRNA:   3'- aCUuGCgGCGCa--G-GUGCCAUUGCUag -5'
22683 3' -53.6 NC_005091.1 + 51594 0.66 0.816099
Target:  5'- cGGGCGCgcagaagCGCGg-CACGGgcGCGAUUc -3'
miRNA:   3'- aCUUGCG-------GCGCagGUGCCauUGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 51867 0.66 0.807612
Target:  5'- cGGACGCCGgGaagaUCGCGGauGCGAUg -3'
miRNA:   3'- aCUUGCGGCgCa---GGUGCCauUGCUAg -5'
22683 3' -53.6 NC_005091.1 + 33831 0.66 0.807612
Target:  5'- cGAACGCCGaCG-CCAgaugcCGGUugAGCGAc- -3'
miRNA:   3'- aCUUGCGGC-GCaGGU-----GCCA--UUGCUag -5'
22683 3' -53.6 NC_005091.1 + 1450 0.66 0.798006
Target:  5'- gGAacACGUCGCGcuUCCACGGgaagaacGCGAa- -3'
miRNA:   3'- aCU--UGCGGCGC--AGGUGCCau-----UGCUag -5'
22683 3' -53.6 NC_005091.1 + 19851 0.67 0.788226
Target:  5'- aUGGGCGCUGCGgaUCgAC--UGGCGAUCg -3'
miRNA:   3'- -ACUUGCGGCGC--AGgUGccAUUGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 33042 0.67 0.757949
Target:  5'- -cAACGCCGC-UCuCGCGGaUGAUGAUg -3'
miRNA:   3'- acUUGCGGCGcAG-GUGCC-AUUGCUAg -5'
22683 3' -53.6 NC_005091.1 + 16028 0.67 0.751744
Target:  5'- gGAACGCCGCGagcgCCaaguggacgaaccagACGGUuACGGc- -3'
miRNA:   3'- aCUUGCGGCGCa---GG---------------UGCCAuUGCUag -5'
22683 3' -53.6 NC_005091.1 + 18484 0.67 0.747583
Target:  5'- -aGACGCaGCGUCagcuuCGCGGUcuuGCGGUCg -3'
miRNA:   3'- acUUGCGgCGCAG-----GUGCCAu--UGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 13227 0.68 0.737099
Target:  5'- aGAccauuGCGCCGCGaUCCGCGc-AACGAa- -3'
miRNA:   3'- aCU-----UGCGGCGC-AGGUGCcaUUGCUag -5'
22683 3' -53.6 NC_005091.1 + 16453 0.68 0.726509
Target:  5'- gGGACGCCGCaUCCGgaaagUGGaucaacaaGACGAUCa -3'
miRNA:   3'- aCUUGCGGCGcAGGU-----GCCa-------UUGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 684 0.68 0.694216
Target:  5'- gGAcuGCGCCGCGcgaaUCCGCaGUGGuCGAUg -3'
miRNA:   3'- aCU--UGCGGCGC----AGGUGcCAUU-GCUAg -5'
22683 3' -53.6 NC_005091.1 + 9158 0.69 0.672366
Target:  5'- -cGACGCCGac-CCACGGU--CGAUCg -3'
miRNA:   3'- acUUGCGGCgcaGGUGCCAuuGCUAG- -5'
22683 3' -53.6 NC_005091.1 + 47056 0.69 0.628294
Target:  5'- aUGAagAUGCCGCGcUCGCGGUcAGCGGg- -3'
miRNA:   3'- -ACU--UGCGGCGCaGGUGCCA-UUGCUag -5'
22683 3' -53.6 NC_005091.1 + 56987 0.7 0.617259
Target:  5'- -uGACGCUggaaagaggGCGUUCGCGGUGAUGcUCg -3'
miRNA:   3'- acUUGCGG---------CGCAGGUGCCAUUGCuAG- -5'
22683 3' -53.6 NC_005091.1 + 6697 0.7 0.606238
Target:  5'- aUGAACGCCGgcagccCGgacgCCGCGcG-AGCGAUCa -3'
miRNA:   3'- -ACUUGCGGC------GCa---GGUGC-CaUUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.